Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O05
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           26   2.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   3.8  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   5.0  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   6.6  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.6  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    25   8.7  

>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 485 NETE*RFKMFNLVNHDLKWFLYFLAHFY 402
           NE + +   F L +  LKWF Y    FY
Sbjct: 153 NEQQQKTTSFFLADDHLKWFTYLTQEFY 180


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 7   SIQRQRLDPRKGTTRKFQRRTY 72
           SI +  L PR GT  +FQ RTY
Sbjct: 653 SIDKLSLCPRLGTCGRFQLRTY 674


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 489 YERNRVKI*DVQFSKS*FKMVFILSR 412
           Y  N +KI DV+   S F+ VF+L +
Sbjct: 178 YSSNSIKICDVEVGPSSFEKVFLLGK 203


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 355 ILKIYTRKSMGNVCLLNITVCKMGFYIINNFIITF 251
           +L++     + NVC LN+ VC      I +FI++F
Sbjct: 476 LLQLKFTDDVRNVCPLNLNVCCCIAEPIQSFILSF 510


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 39  RNYQKVSEKNLYVTEQNPSHYRS 107
           RNY  ++EK  YVT ++ SH+R+
Sbjct: 120 RNYL-LTEKGFYVTTRSISHFRA 141


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 113 PYLVSFISKKYLVTNTSKLAYKNAYRLNSCNNILVTISLISYFITIKRNNKVIYYIKPH 289
           P L SF S   +V      A  N YR +   + L +    + + T K+ N +   +KPH
Sbjct: 157 PPLSSFQSASDIVRRYGFTALWNGYRYHLTRDALGSACYFTIYETFKK-NLIANDVKPH 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,488
Number of Sequences: 5004
Number of extensions: 38010
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)