Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O05
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991...    33   0.18 

>03_05_0798 +
           27798095-27798190,27798325-27798366,27799152-27799190,
           27799238-27799420
          Length = 119

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 137 KKYLVTNTSKLAYKNAYRLNSCNNI--LVTISLISYFITIKRNNKVIYYIKPHLTNCDI 307
           K YL      LAY    R+  C+N     T +L+  FI  KRN++  +Y  PH+    I
Sbjct: 40  KAYLFNKLKLLAYNTVLRIIVCDNFPNCFTTNLMPKFIIGKRNDRWAHY--PHMEKASI 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,567,523
Number of Sequences: 37544
Number of extensions: 173944
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)