Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O05
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical ...    31   0.64 
AL132904-16|CAC35849.1|  340|Caenorhabditis elegans Hypothetical...    29   2.6  
AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine re...    29   2.6  
Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    27   6.0  
Z82051-8|CAB04814.1|  349|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z82051-5|CAB04813.1|  216|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical
           protein T20H9.6 protein.
          Length = 758

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +2

Query: 122 VSFISKKYLVTNTSKLA--YKNAYRLNSCNNILVTISLISYFITIKRNNKVI 271
           +S + + Y + NT K+    KN++  NS N+  + ++ +S F  I RN++VI
Sbjct: 448 ISTLKELYKLMNTLKIEENQKNSFIKNSKNSAQIEVNSLSEFKDIGRNSQVI 499


>AL132904-16|CAC35849.1|  340|Caenorhabditis elegans Hypothetical
           protein Y111B2A.20 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 131 ISKKYLVTNTSKLAYKNAY-RLNSCNNILVTISLISYFITIKRNNKVIY 274
           I K Y  T TS + Y N Y  L     +LVT  L S+F  ++R+  V +
Sbjct: 200 IKKSYQRTGTSMMFYTNLYSSLYLSAGLLVTGELWSFFYFVQRHPYVFW 248


>AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein134 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 346 IYTRKSMGNVCLLNITVCKMGFYIINNFIITFDSNKI 236
           + TRKSM   C+ NIT+  +  Y I +F  TF+   I
Sbjct: 58  VLTRKSMRTSCI-NITMTAVAIYDIFSFFSTFEVTAI 93


>Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical
           protein B0464.6 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 74  RNRTKSESLPLA*PYLVSFISKKYLVTNTSKLA---YKNAYRLNS 199
           R+  KS  LP   P+L    ++KYL++   +L    + +AY+ NS
Sbjct: 448 RDSLKSSDLPFLLPFLSVHPNQKYLISRIKELCATQFMDAYKWNS 492


>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = +2

Query: 77  NRTKSESLPLA*PYLVSFISKKYLVTNTSKLAYKNAYRLNSCNNILVTISLISYFITIKR 256
           + T++ +L +  P  V+F S KY+   T   A  +  RL+ CN++ V +        I+ 
Sbjct: 157 DETEAVTLEVKDPVNVNF-SIKYMNQFTKATALSDRVRLSLCNDVPVVVE-----YPIEE 210

Query: 257 NNKVIYYIKPHL 292
           N  + +Y+ P +
Sbjct: 211 NGYLRFYLAPKI 222


>Z82051-8|CAB04814.1|  349|Caenorhabditis elegans Hypothetical
           protein T23D5.11 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -3

Query: 427 FYTFSLIFIRNMHSI------FSFDRTIN*ILKIYTRKSMGNVC--LLNITVCKMGFYII 272
           F TF  +F   +H+       FSF R +   L  +T + M  +   L + T+C++    I
Sbjct: 45  FATFEYLFHTFLHTYNASLIYFSFSRPLG--LSNFTMEWMMGIYTGLYSATICQLAIQFI 102

Query: 271 NNFIITFDSNKITY 230
             +   FD+ KI Y
Sbjct: 103 YRYWALFDTPKIKY 116


>Z82051-5|CAB04813.1|  216|Caenorhabditis elegans Hypothetical
           protein T23D5.8 protein.
          Length = 216

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -3

Query: 427 FYTFSLIFIRNMHSI------FSFDRTIN*ILKIYTRKSMGNVC--LLNITVCKMGFYII 272
           F TF  +F   +H+       FSF R +   L  +T + M  +   L + T+C++    I
Sbjct: 45  FATFEYLFHTFLHTYNASLIYFSFSRPLG--LSNFTMEWMMGIYTGLYSATICQLAIQFI 102

Query: 271 NNFIITFDSNKITY 230
             +   FD+ KI Y
Sbjct: 103 YRYWALFDTPKIKY 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,428,191
Number of Sequences: 27780
Number of extensions: 201180
Number of successful extensions: 435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)