Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O04
         (131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   0.34 
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   0.45 
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    24   2.4  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    24   2.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   3.2  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    23   5.5  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    23   7.3  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    22   9.7  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    22   9.7  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    22   9.7  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 23   FSGESVENEVPSYDFPFVSRSQWSARQPN 109
            FS   + ++VP ++F F+SR+ W+A   N
Sbjct: 1006 FSINDILSQVPVFEFIFLSRNFWTASLGN 1034


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 5   KAYPSIFSGESVENEVPSYDFP-FVSRSQWSARQPNQTL 118
           + Y    SG+SVE E P   FP   +R+ W   + +Q+L
Sbjct: 38  QVYRCPISGKSVEYECPESGFPTHCNRTHWEQDKIHQSL 76


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 20  IFSGESVENEVPSYDFPFVSRSQWSARQPNQTLPLK 127
           I +  S+ NE+PSYD         +A  PN T   K
Sbjct: 8   IVNPHSITNEIPSYDEKQAVDLNGNAFAPNGTFQKK 43


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 41  ENEVPSYDFPFVSRSQWSARQPNQTLPLK 127
           E  +P     F++   WS+RQ +  LP+K
Sbjct: 294 EGFLPEAILNFIALMGWSSRQKSDFLPMK 322


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 131  EFSEARSGLVASHSTANDSRKESHMTELHFPL 36
            EFSE  S  + SH+ +N    E  +  LH  L
Sbjct: 1033 EFSEWFSKDIESHAQSNTQLNEQQLKRLHMIL 1064


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 104 VASHSTANDSRKESHMTELHFPLIHLKKLM 15
           V+S S  + + K+   T LH  + +LKK +
Sbjct: 145 VSSPSKTHKANKDEKATRLHLIIANLKKAL 174


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 548

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 92 STANDSRKESHMTELHF 42
          S A++   E H+TE+HF
Sbjct: 29 SYASEKLSEDHVTEVHF 45


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 14  PSIFSGESVENEVPSYDFPFVSRSQWSARQ 103
           PS F+G    + +PSY+   V  +   +RQ
Sbjct: 407 PSAFNGLLTSSRIPSYNGSKVRSTSHPSRQ 436


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 131 EFSEARSGLVASHSTANDSRKES 63
           + +EAR G + SH+T   ++K S
Sbjct: 89  KLTEAREGKLKSHATGLSTQKTS 111


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 131 EFSEARSGLVASHSTANDSRKES 63
           E S+  S  V  HS   +SR+ES
Sbjct: 150 EASKEESKTVTDHSNRRESRRES 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,068
Number of Sequences: 5004
Number of extensions: 7620
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 24
effective length of database: 2,242,382
effective search space used: 42605258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)