Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O04
         (131 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0990 - 29955207-29955551,29955639-29955813,29955887-299560...    26   3.7  
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248...    25   8.5  

>04_04_0990 -
           29955207-29955551,29955639-29955813,29955887-29956017,
           29956317-29956436,29956908-29956984,29957070-29957316,
           29957413-29957569,29958191-29958309,29958421-29958555,
           29958636-29958921,29959009-29959211,29959732-29959881,
           29960084-29960266,29960931-29961278
          Length = 891

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 5   KAYPSIFSGESVENEVPSYDFPFVSRSQWSARQPNQTLPLKT 130
           K    +  G+ +EN V  YD+    +  +  R+P++ L L T
Sbjct: 674 KKEEELLRGQELENAVSDYDYAKAIQLAFELRRPHRLLELFT 715


>11_01_0332 +
           2483743-2484131,2486062-2486182,2486307-2486426,
           2486897-2487127,2487205-2487783
          Length = 479

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 105 GCLALHCERLTKGKSYDGTSFSTDSPEKIDG 13
           G  +L+  R  KGK   GTS +T S EK  G
Sbjct: 432 GSRSLNSRRTRKGKGQSGTS-ATSSAEKSKG 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,637,822
Number of Sequences: 37544
Number of extensions: 45795
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 14,793,348
effective HSP length: 24
effective length of database: 13,892,292
effective search space used: 263953548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)