Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O03
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       39   0.004
04_03_0649 - 18402976-18403220,18403305-18404499                       39   0.004
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272...    29   4.1  
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    28   7.2  
12_02_0292 + 16979550-16980662,16983249-16983731                       27   9.5  
05_03_0191 - 9521496-9521921                                           27   9.5  
03_05_0101 - 20803546-20803800,20803907-20804700,20804788-208050...    27   9.5  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 1/157 (0%)
 Frame = +3

Query: 3   APIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHA 179
           AP+Y   ++D   +A   +  W+  G P  KLV+GI   GR+W L + D    G P   A
Sbjct: 249 APLY---DKDSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAA 305

Query: 180 DEGGEAGSYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGE 359
              G     +   G+++Y EI   L       K   +   +D ++    Y +        
Sbjct: 306 ---GTKQRKSNQIGVIAYAEIEEYL-------KSQSVFVTHD-NQSVADYFY-------S 347

Query: 360 GGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDD 470
           G  WVS++       K  +V    L G  +  +S DD
Sbjct: 348 GDLWVSFDSAVVVQEKVEFVAKSQLLGYFLSTISFDD 384


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 37/156 (23%), Positives = 63/156 (40%)
 Frame = +3

Query: 3   APIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHAD 182
           AP+Y   +R    +A   +  W+  G P  K+V+GI   GR+W L + +      P+ A 
Sbjct: 250 APLY---DRASHYSASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAA 306

Query: 183 EGGEAGSYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEG 362
              + GS     G +SY E+   L      G R  +   ++ S    +Y          G
Sbjct: 307 GPKQRGS--NATGAMSYAEV-QWLAATATRGSRAVITAYDNAS--VASYV-------SVG 354

Query: 363 GFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDD 470
             WV+++       K ++     L G  +  ++ DD
Sbjct: 355 DVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDD 390


>07_01_0365 +
           2718707-2718839,2719335-2719405,2719512-2719955,
           2720660-2721802
          Length = 596

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 31  ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 141
           ++Y +PT++ + GF   +    LSLV+A L+  GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329


>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 448 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPXSSGRRKA 329
           M T P       +A   A  GS  +T  PPSP   GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581


>12_02_0292 + 16979550-16980662,16983249-16983731
          Length = 531

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 89  PQTCPWYQHHWTYVEARFR 145
           P+   W QHHWT    R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523


>05_03_0191 - 9521496-9521921
          Length = 141

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 77  WCAYPQTCPWYQHHWTYVEARFR 145
           W   P+   W++ HWT   AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141


>03_05_0101 -
           20803546-20803800,20803907-20804700,20804788-20805042,
           20805143-20805263,20805716-20805768,20805979-20806239,
           20806734-20806784,20806900-20807148,20807257-20807479,
           20807737-20807910
          Length = 811

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 171 IHADEGGEAGSYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSK 314
           +HA++ G+ G++     +  Y ++C   + PNQ  +   + + ND  K
Sbjct: 125 LHANDDGDGGTFALYSLISRYAKVC---LIPNQQAEDELVTRYNDHGK 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,212,132
Number of Sequences: 37544
Number of extensions: 411988
Number of successful extensions: 1037
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)