Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O03
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 57  INYWIQNGAPTHKLVLGIST--TGRTWKLDSDSEISGV 164
           +++WI   A + ++ LGI+T  T  T  LDS +++  V
Sbjct: 264 VSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKV 301


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 57  INYWIQNGAPTHKLVLGIST 116
           +++WI + A + ++ LGI+T
Sbjct: 261 VSFWINHEATSARVALGITT 280


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 16  HRRTAILYKTPT 51
           H++TAI ++TPT
Sbjct: 279 HKQTAIAFRTPT 290


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 16  HRRTAILYKTPT 51
           H++TAI ++TPT
Sbjct: 279 HKQTAIAFRTPT 290


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 364  ASGFLTKILTRPETKLVT*KQRTLAVCPS 450
            ++ F +K++TRP+T       + +AV P+
Sbjct: 1136 STSFDSKVMTRPDTDSENWTPKMMAVEPT 1164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,675
Number of Sequences: 438
Number of extensions: 4359
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)