Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_O01
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...   199   2e-52
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...   183   2e-47
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    28   1.0  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   1.4  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   3.1  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   5.5  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   7.2  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   9.5  
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    25   9.5  

>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score =  199 bits (485), Expect = 2e-52
 Identities = 88/147 (59%), Positives = 110/147 (74%)
 Frame = +2

Query: 101 NEFIDEIEILAQNRSLETYKLNPEEWGVNVQPYSGSPANFAVYTGVVEPHGTIMGLDLPD 280
           N+FID+IE L Q R+L  + L+P +WGVNVQ  SGSPAN  VY  ++ PHG +MGLDLP 
Sbjct: 72  NKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLPS 131

Query: 281 GGHLTHGFFTANKKISATSIFCESMPYKVDPTTGLIDYDKLAETAKLFKPRVIIAGMSCY 460
           GGHL+HG+ T  KKISA S + ESMPY+VDP TGLIDYD L   A+LF+P++++AG S Y
Sbjct: 132 GGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAY 191

Query: 461 SRCLDY*RFRQIADENGAYLMADMAHV 541
            R +DY R RQIAD   AYL+ DMAH+
Sbjct: 192 CRLIDYARMRQIADSVNAYLVVDMAHI 218



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 20/32 (62%), Positives = 22/32 (68%)
 Frame = +1

Query: 1   SENFTSVPVLQCLSSCLHNKYSEGMPYQRYYG 96
           SENFTS  V+  L S + NKYSEG P  RYYG
Sbjct: 39  SENFTSRAVMDALGSVMSNKYSEGYPGARYYG 70


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score =  183 bits (445), Expect = 2e-47
 Identities = 82/147 (55%), Positives = 106/147 (72%)
 Frame = +2

Query: 101 NEFIDEIEILAQNRSLETYKLNPEEWGVNVQPYSGSPANFAVYTGVVEPHGTIMGLDLPD 280
           NEFID+ E L Q R+LE + L+ E+WGVNVQP+SGSPAN   Y  V++PH  +MGLDLP 
Sbjct: 78  NEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLMGLDLPH 137

Query: 281 GGHLTHGFFTANKKISATSIFCESMPYKVDPTTGLIDYDKLAETAKLFKPRVIIAGMSCY 460
           GGHL+HGF T  K ISA S +  +MPY V+  TG+IDYD L + A  F+P+VI+AG S Y
Sbjct: 138 GGHLSHGFSTPQKAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAY 197

Query: 461 SRCLDY*RFRQIADENGAYLMADMAHV 541
           +R +DY R R+I +   AYL+ DMAH+
Sbjct: 198 ARLVDYKRMRKITEMCNAYLLCDMAHI 224



 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 20/32 (62%), Positives = 22/32 (68%)
 Frame = +1

Query: 1   SENFTSVPVLQCLSSCLHNKYSEGMPYQRYYG 96
           SENFTS  V+  L S + NKYSEG P  RYYG
Sbjct: 45  SENFTSRAVMDALGSIMQNKYSEGYPGARYYG 76


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 297 MDSLQQTRKYLLHLYSVRVCH 359
           +D +Q+T+KY+ H Y V V H
Sbjct: 21  LDKVQKTKKYIEHYYKVAVDH 41


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 347  ESMPYKVDPTTGLIDYDKLAETAKLFKPRVIIAGMSCYSRCL 472
            E++P  ++P + L +   +    +   P +IIA   CYS CL
Sbjct: 934  EALPLVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYSTCL 975


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 257 LYHAV-QQHPYKQQSLLATLNKVEHLLPILQ 168
           LY ++ ++ PYK +SLLA +  + ++L I +
Sbjct: 194 LYSSILEEFPYKDESLLAQMTYISNVLSICE 224


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 170 EEWGVNVQPYSGSPANFAVY 229
           EE+G  ++P  G  AN+ +Y
Sbjct: 57  EEYGSTIRPNEGEAANYGIY 76


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 351 LSQNIDVADIFLFAVKNPWVKCPPSGKSNPII 256
           L+ NID+  IFL  V  P     P+G+ +PI+
Sbjct: 620 LADNIDIVTIFLSLVHPP----SPAGELHPIV 647


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 164 LACMFPVTYFVPIFLF 117
           L   FP T+F+PI LF
Sbjct: 399 LVISFPATFFIPICLF 414


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 227 KQQSLLATLNKVEHLLPILQDLACMFPVTYFVPI 126
           K+ + L   NK E L PI+ D+ C++ V    PI
Sbjct: 90  KEINSLQKKNKKELLTPIMLDMPCVYFVKTRPPI 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,174
Number of Sequences: 5004
Number of extensions: 49826
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)