Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N24
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    25   5.5  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    24   7.2  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   7.2  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    24   7.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    24   7.2  

>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 131 TISHKAPPRLHDIDCQIRKFNELKE 57
           T+SH      ++++  IRK NEL+E
Sbjct: 48  TLSHTQEQEFNELNKLIRKINELQE 72


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 295 RSPLTKKHNLLYCPKVIHMCQFDSFPVRS 381
           +S LTKK N+ Y P   H  + +S P+R+
Sbjct: 382 KSGLTKKTNIPYSPNSNHE-EINSIPLRN 409


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 38  LSCSSRFLLIH*TCVFDNLYHVILVALCVI 127
           LS S  F +IH   + DN+ H+ L   C +
Sbjct: 294 LSSSDVFTIIHLLQIPDNIKHIELQCFCKV 323


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 299 DLWYRTILCQCHE 261
           DLW  T+LCQ H+
Sbjct: 604 DLWRDTLLCQFHD 616


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 65  LKENDCYMTDRDPAKNSQLY 6
           L EN C + D +PAK+ +L+
Sbjct: 46  LLENFCQLYDNNPAKSKRLF 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,236
Number of Sequences: 5004
Number of extensions: 30485
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)