Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N24
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0377 - 4970034-4970687                                           29   1.7  
03_01_0301 - 2357324-2358861,2359553-2359661                           28   3.0  
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    28   3.0  
11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580     27   5.2  
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167...    27   6.9  
07_03_0804 - 21639016-21639231,21639379-21639555,21640120-216405...    27   6.9  
06_02_0152 - 12316242-12316248,12316634-12316800,12317689-123178...    26   9.1  

>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 295 CGTAQFCASVMNSQRCQLQQNGGSSCSN 212
           CGT     +  +SQRC   Q GG++CSN
Sbjct: 49  CGTGCQSGACCSSQRCG-SQGGGATCSN 75


>03_01_0301 - 2357324-2358861,2359553-2359661
          Length = 548

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 188 LKNICYALSSIINLQQIK*TISHKAP 111
           LKN   +LSS+ NL+QIK  I H  P
Sbjct: 229 LKNFDSSLSSMPNLEQIKALIEHYGP 254


>02_01_0451 -
           3237849-3238061,3238142-3238268,3238418-3238656,
           3238937-3239151,3239569-3240031,3240562-3240715,
           3241724-3241833,3242540-3242797,3242843-3242854,
           3243492-3243545,3244202-3244312,3244390-3244545,
           3244798-3245201,3245405-3245501,3246041-3246050,
           3246097-3246164,3246652-3246762,3246874-3247074,
           3247384-3247485,3247980-3248087,3248209-3248411,
           3248563-3248680,3248774-3248854,3248958-3249500,
           3249602-3249730
          Length = 1428

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 274 HKIVRYHRSPLTKKHNLLYCPKVIHMCQFDSF 369
           H  +R ++ P+  +H L Y  +V  +C+ D+F
Sbjct: 599 HLFIRTNKRPVPLEHCLFYSGEVFKICEKDAF 630


>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
          Length = 1101

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
 Frame = -1

Query: 278  LCQCHEFSAVPTPAKRWXXXXXXXXXLCRHLKNICYALSSIINLQQIK*TISHKAPPRLH 99
            +C CHE + +P   +            C  L+ +   L    +LQ I+        P LH
Sbjct: 954  ICGCHELTCLPQGLQHISSIRSLAIDNCNKLETLPEWLEHQPSLQVIR----LSGCPALH 1009

Query: 98   DIDCQIRKFN--ELKENDC-YMTDRDPAK 21
             I   + + N  E+  NDC  +T++   K
Sbjct: 1010 SISEGLLRGNSIEIHMNDCPNLTEQSSGK 1038


>10_01_0140 -
           1674305-1674586,1674683-1674838,1675676-1676622,
           1678976-1679054,1679168-1679207,1679580-1679767,
           1679869-1680024,1680752-1681713,1681866-1681914
          Length = 952

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 289 YHRSPLTKKHNLLYCPKVIHM 351
           YH   LT ++NL  CPK I++
Sbjct: 333 YHGKKLTMENNLQLCPKFINL 353


>07_03_0804 -
           21639016-21639231,21639379-21639555,21640120-21640588,
           21640608-21641218
          Length = 490

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 300 RSVVPHNFVPVS*ILSGANSSKTVAPPARTFDGTLSAPQEYMLRVIFYNKL 148
           RS+   +F  +  + SGA+  K  +P   T D        Y +++ +Y+KL
Sbjct: 330 RSMGQSDFTKILELFSGADVLKLTSPMTATLDSEEQESLIYSVQLPYYSKL 380


>06_02_0152 -
           12316242-12316248,12316634-12316800,12317689-12317800,
           12317930-12317999,12318535-12318535,12318791-12319144
          Length = 236

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 164 ITRSIYS*GADKVPSKVRAGGATVLLELAPLRI 262
           + R++ S      PS++R+G  T L+  APLR+
Sbjct: 73  VWRTVASVDNASPPSRLRSGTPTALMPTAPLRL 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,690,159
Number of Sequences: 37544
Number of extensions: 189729
Number of successful extensions: 376
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)