Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N23
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    27   1.5  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   6.0  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   7.9  

>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +3

Query: 156 SITRGLVHRANDVLKC-MNKSDLHQKRTVLFVSSTFK*QLC*TSFHFKKMSASYRSEEMG 332
           +I+ G+   AN V  C  NK  + Q+      S     ++C    + +K+ A +  +E+ 
Sbjct: 103 AISEGIKELANIVPGCEKNKGSILQRTAQYIRSLKEMEEMCREKSNLEKLVADHTIQELA 162

Query: 333 DDTAIAALECAETFLSV 383
            + A    EC   + SV
Sbjct: 163 RENARLKSECERAWRSV 179


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 421 NILCVVGLRKIPHTDKNVSAH 359
           +I+C+ GLR+I  T KN S +
Sbjct: 866 DIICLSGLREIVETKKNFSTY 886


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 307 HLTGLKKWVMTLQLQH*NALKRFCQYAVFSLSLL 408
           ++  ++ W+     Q+ N  K FC+ A+F   LL
Sbjct: 96  NIDAMQNWIFPQTQQYRNYQKEFCEQALFHNLLL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,097
Number of Sequences: 5004
Number of extensions: 48468
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)