Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_N22
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818 30 0.40
08_02_1583 + 28036125-28037030,28037411-28037656 28 2.1
03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774... 28 2.1
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 27 2.8
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 27 2.8
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 27 3.8
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 27 3.8
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537... 27 5.0
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824... 27 5.0
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 26 8.7
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 26 8.7
03_01_0178 + 1437263-1438017,1438754-1438858,1438950-1439072,143... 26 8.7
>07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818
Length = 201
Score = 30.3 bits (65), Expect = 0.40
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +2
Query: 26 SSCQFFWSASTAGTCSLKSLVNTSNNMRISRSSGPTPGYAGK 151
+ C FF SA+T G CS K R SS P PG A K
Sbjct: 19 AGCGFFGSAATGGLCS-KCYKEQQPQPRHHISSAPPPGTATK 59
>08_02_1583 + 28036125-28037030,28037411-28037656
Length = 383
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3
Query: 154 PLAGVPWSWPTAPAD 110
PLA V SWPT+PAD
Sbjct: 179 PLAAVVESWPTSPAD 193
>03_04_0112 -
17375871-17376099,17377021-17377054,17377237-17377470,
17377636-17377705
Length = 188
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 17 PSYSSCQFFWSASTAGTCSLKSLVNT 94
PS+S C F SAS AGT L V T
Sbjct: 101 PSFSGCTFPSSASAAGTTGLSPGVGT 126
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -1
Query: 264 ISEIYGAKSTEPVIFVSSYRYLDHST*GAVRVDSESTRLPAYPGVG 127
+ E+ G K E F S Y H T GA +D LPAYPG G
Sbjct: 546 VHEVLGLKDLE---FQSLY----HFTVGAPVLDKRIMSLPAYPGPG 584
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 148 AGVPWSWPTAPADPHIVRCINQALQRARTG 59
AG PW+W +PA + +C A +R TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 151 AGALTINSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 324
AG + + G V + G +NH +S +G GA TAG AY+ +N G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 41 FWSASTA-GTCSLKSLVNTSNNMRISRSSGPT 133
FW ST CS L+ NN +SR +GP+
Sbjct: 40 FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71
>07_03_1164 +
24451808-24451868,24452690-24452923,24453735-24453768,
24454372-24454627
Length = 194
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 17 PSYSSCQFFWSASTAGTCSLKSLVNTSNNM 106
PS S C F SAS AGT + ++ T+ M
Sbjct: 98 PSVSGCSFPASASGAGTSTTPTMGGTTGTM 127
>06_03_1025 -
26980631-26981286,26981434-26981557,26982290-26982426,
26983220-26983355,26983615-26983922,26985159-26985207
Length = 469
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 154 GALTINSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 324
G SD + A V P E+ ++ G+V++ +L AAT D + G G
Sbjct: 23 GLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKNFRPDQILGEG 79
>10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 89 NTSNNMRISRSSGPTP 136
NTSNN+R R+ GP P
Sbjct: 1280 NTSNNIRNMRTGGPRP 1295
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 132 LQGTPASGCSHYQL*RHLRCYGQGTYN 212
L G P G ++ + +LRCYG +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328
>03_01_0178 +
1437263-1438017,1438754-1438858,1438950-1439072,
1439908-1440078,1440163-1440292,1440372-1440581,
1440675-1440773
Length = 530
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 157 ALTINSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 324
A T GA + +G+ +S LG +L AT GLA +NV G G
Sbjct: 172 ATTSGGSERDGATPRSTASGSAGPEVSHLGWGHWFTLRELEEATDGLAEENVIGEG 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,949,936
Number of Sequences: 37544
Number of extensions: 167179
Number of successful extensions: 389
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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