Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_N21
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 244 5e-65
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 244 5e-65
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 120 1e-27
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 120 1e-27
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 117 7e-27
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 103 7e-23
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 102 2e-22
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 101 4e-22
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 96 2e-20
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 96 2e-20
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 95 4e-20
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 89 2e-18
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 77 1e-14
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 76 2e-14
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 76 2e-14
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 75 5e-14
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 70 1e-12
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 66 1e-11
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 66 2e-11
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 64 5e-11
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 63 1e-10
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 61 5e-10
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 58 6e-09
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 52 2e-07
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 43 2e-04
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 31 0.82
AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormo... 30 1.1
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81461-6|CAB03837.1| 272|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z69658-2|CAB60997.1| 389|Caenorhabditis elegans Hypothetical pr... 28 5.8
U59213-1|AAB09672.1| 363|Caenorhabditis elegans transmembrane p... 28 5.8
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 244 bits (596), Expect = 5e-65
Identities = 108/115 (93%), Positives = 112/115 (97%)
Frame = +2
Query: 248 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 427
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 428 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNP 592
PFKPPKVAFTTRIYHPNINSNGSICLDILR+QWSPALTISKVLLSICSLLCDPNP
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 244 bits (596), Expect = 5e-65
Identities = 108/115 (93%), Positives = 112/115 (97%)
Frame = +2
Query: 248 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 427
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 428 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNP 592
PFKPPKVAFTTRIYHPNINSNGSICLDILR+QWSPALTISKVLLSICSLLCDPNP
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 120 bits (288), Expect = 1e-27
Identities = 49/112 (43%), Positives = 77/112 (68%)
Frame = +2
Query: 257 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 436
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 437 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNP 592
PP V F ++++HPN+ ++GSICLDIL+ +WSP ++ +L SI SLL +PNP
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNP 118
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 120 bits (288), Expect = 1e-27
Identities = 49/112 (43%), Positives = 77/112 (68%)
Frame = +2
Query: 257 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 436
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 437 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNP 592
PP V F ++++HPN+ ++GSICLDIL+ +WSP ++ +L SI SLL +PNP
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNP 118
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 117 bits (281), Expect = 7e-27
Identities = 58/112 (51%), Positives = 71/112 (63%)
Frame = +2
Query: 257 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 436
+RI +E Q L DP SA P + ++ I GP DSP+ GGVF L + P +YP
Sbjct: 7 RRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMA 66
Query: 437 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNP 592
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNP
Sbjct: 67 APKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 118
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 103 bits (248), Expect = 7e-23
Identities = 47/89 (52%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Frame = +2
Query: 329 EDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICL 505
E+L + I GP D+PY GG+F L I P YPF PP V F+T+I+HPN++S G ICL
Sbjct: 34 ENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICL 93
Query: 506 DILRAQWSPALTISKVLLSICSLLCDPNP 592
DIL+ QW+ +LT+ VLLSI +L+C P P
Sbjct: 94 DILKDQWAASLTLRTVLLSIQALMCTPEP 122
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 102 bits (244), Expect = 2e-22
Identities = 53/127 (41%), Positives = 72/127 (56%), Gaps = 14/127 (11%)
Frame = +2
Query: 251 ALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 427
ALKR+ E ++L PP A P ED F W+ I GP ++ + GVF I FP DY
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 428 PFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLSIC 568
P PPK+ FT I+HPNI ++G +C+ IL A +WSP +I K+LLS+
Sbjct: 65 PLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVV 124
Query: 569 SLLCDPN 589
S+L +PN
Sbjct: 125 SMLAEPN 131
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 101 bits (242), Expect = 4e-22
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +2
Query: 248 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTI 409
MALKRI +EL DLGRDPPAQCS G G+DL+HWQATIMGP +SPYQGG+FFLTI
Sbjct: 1 MALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIFFLTI 54
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 95.9 bits (228), Expect = 2e-20
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 14/123 (11%)
Frame = +2
Query: 263 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 439
+ ++L D+ R P SAG D++ W+ ++GP D+ Y+GG F + FP DYP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 440 PKVAFTTRIYHPNINSNGSICLDIL-------------RAQWSPALTISKVLLSICSLLC 580
PK+ F + I+HPNI+ G++C+ IL +W P T+ +LLS+ S+L
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 581 DPN 589
DPN
Sbjct: 128 DPN 130
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 95.9 bits (228), Expect = 2e-20
Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 13/126 (10%)
Frame = +2
Query: 251 ALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYP 430
AL+ + EL++L P + + ++LF W I GP + YQGG F +I FP++YP
Sbjct: 11 ALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNYP 70
Query: 431 FKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLSICS 571
+ PP + FTT+++HPN+ NG +C+ IL + +W+P ++ +LLS+ S
Sbjct: 71 YSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVIS 130
Query: 572 LLCDPN 589
LL +PN
Sbjct: 131 LLNEPN 136
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 94.7 bits (225), Expect = 4e-20
Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +2
Query: 251 ALKRINRELQDLGR-DPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 427
A +R+ +EL DL A + +L W ++ P PY G F + I FP DY
Sbjct: 3 ATRRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDY 61
Query: 428 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQ-WSPALTISKVLLSICSLLCDPNP 592
PFKPPKVAF T+IYHPN++ G CL I+ A+ W PA +V++++ SL+ +P P
Sbjct: 62 PFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEP 117
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 89.0 bits (211), Expect = 2e-18
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 20/137 (14%)
Frame = +2
Query: 242 NQMALKRINRELQDLGRDPPAQCSAGPHGE----DLFHWQATIMGPVDSPYQGGVFFLTI 409
+ +AL R+ R+ +++ AG H E +L + I GP +PY GG F + +
Sbjct: 16 SNLALARVTRKCKEVANASDIT-EAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKV 74
Query: 410 HFPTDYPFKPPKVA---------------FTTRIYHPNINSN-GSICLDILRAQWSPALT 541
P YPF+PPKV F TRI+HPNI+S G+ICLDIL+ +W+ +LT
Sbjct: 75 DIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLT 134
Query: 542 ISKVLLSICSLLCDPNP 592
+ VLLS+ ++LC P P
Sbjct: 135 LRTVLLSLQAMLCSPEP 151
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 76.6 bits (180), Expect = 1e-14
Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Frame = +2
Query: 251 ALKRINRELQDLGRDPPAQCSAG--PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 424
A +R+ +EL L + P DL W+ ++G + Y G VF L F
Sbjct: 5 ATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGPQ 64
Query: 425 YPFKPPKVAFT--TRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLL 577
YPF P+V F T HP+I SNG ICL IL W+PAL++ V LSI S+L
Sbjct: 65 YPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSML 117
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 76.2 bits (179), Expect = 2e-14
Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Frame = +2
Query: 332 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 511
+LF+W+ I G D+ ++GG++ + + F D+P PPK F ++HPN+ +G++CL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 512 L--RAQWSPALTISKVLLSICSLLCDPN 589
L W P+++I ++L+ I LL PN
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPN 124
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 76.2 bits (179), Expect = 2e-14
Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Frame = +2
Query: 332 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 511
+LF+W+ I G D+ ++GG++ + + F D+P PPK F ++HPN+ +G++CL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 512 L--RAQWSPALTISKVLLSICSLLCDPN 589
L W P+++I ++L+ I LL PN
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPN 124
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 74.5 bits (175), Expect = 5e-14
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Frame = +2
Query: 248 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 427
+AL+R+ ++ Q L ++P A P ++ W+ I+G +PY+GG++ + FP D+
Sbjct: 8 VALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDF 67
Query: 428 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQ---WSPALTISKVLLSICSLLCDPNP 592
PFKPP + T + +N +CL I W+PA T+S ++ + S + D P
Sbjct: 68 PFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP 123
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 69.7 bits (163), Expect = 1e-12
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +2
Query: 347 QATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICL-DILRA 520
Q I G ++PY+GG+F L I YPFK P V F T+I+HP+++ +G+ICL D+
Sbjct: 382 QGIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNG 441
Query: 521 QWSPALTISKVLLSICSLLCDPN 589
W ++TI KVL+ I S + + N
Sbjct: 442 VWPVSMTIYKVLIVIQSWMSNFN 464
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 66.5 bits (155), Expect = 1e-11
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +2
Query: 362 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRAQWSPAL 538
GP D+ Y+ GV+ + + P YPFK P + F +I+HPNI+ ++G++CLD++ W+
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALY 100
Query: 539 TISKVL-LSICSLLCDPN 589
++ + + LL PN
Sbjct: 101 DLTNIFDTFLPQLLTYPN 118
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Frame = +2
Query: 356 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-----IYHPNINSNGSICLDIL-- 514
I GP D+PY G+F I FPT YPF PPK AF T ++PN+ ++G ICL IL
Sbjct: 449 ISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGT 508
Query: 515 -----RAQWSPALTISKVLLSI 565
+W+P ++ +VL+SI
Sbjct: 509 WEGRPEEKWNPYCSLMQVLVSI 530
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 64.5 bits (150), Expect = 5e-11
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Frame = +2
Query: 326 GEDLF-HWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 502
G D++ W T+ GP SP++GG + ++++F +P PP F T ++HPN++ GSI
Sbjct: 64 GADIWCSWICTVPGPRGSPWEGGEYEVSVNFHK-WPIIPPICEFKTPLHHPNVDLRGSIY 122
Query: 503 LDILRAQ-WSPALTISKVLLSICSLLCDPN 589
L +L + WS ++ K+L I +LL P+
Sbjct: 123 LKMLEQEHWSSETSLKKLLREISNLLATPD 152
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 63.3 bits (147), Expect = 1e-10
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Frame = +2
Query: 254 LKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPF 433
++R+ +E +L R P A P ++LF W TI G + + ++GG++ I FP DYP
Sbjct: 12 VRRLMKEAMEL-RQPTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPM 70
Query: 434 KPPKVAFTTRIYHPNINSNGSICLDIL---RAQWSPALTISKVLLSICSLL 577
KPP + T + N +CL I W P+ +I LL++ L
Sbjct: 71 KPPNLILLTP--NGRFELNKKVCLSISGYHPETWLPSWSIRTALLALIGFL 119
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 61.3 bits (142), Expect = 5e-10
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Frame = +2
Query: 251 ALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYP 430
A++R+ ++ L +DP A P+ +++ W + G D+P+ GG ++ + F ++P
Sbjct: 20 AVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKENFP 79
Query: 431 FKPPKVAFTTRIYHPNINSNGSICL---DILRAQWSPALTISKVLLSICSLLCDPNP 592
+ PP + T + +N +CL D W+P T+S +L+ + S + + +P
Sbjct: 80 WSPPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFMNENSP 134
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +2
Query: 365 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ------W 526
P + Y+GG F I P +Y PP V T+++HPNIN +GSICL ILR W
Sbjct: 67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGW 126
Query: 527 SPALTISKVLLSICSLLCD 583
P ++ V+ + SL D
Sbjct: 127 RPTRNLTDVVHGLVSLFND 145
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 57.6 bits (133), Expect = 6e-09
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Frame = +2
Query: 254 LKRINRELQDLGRDPPAQCSAGPHGE---DLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 424
L RI +E+ DL ++ E D+F ++ G + Y+ +F LT+ +
Sbjct: 15 LSRIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVL---YKNMIFTLTLDVNVE 71
Query: 425 YPFKPPKVAFTTRIYHPNINS-NGSICLD-ILRAQWSPALTISKVLLSICSLLCDPN 589
YPFKPP + F +YHPN++ +C +L+ W P T+ VLL++ LL +P+
Sbjct: 72 YPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPD 128
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 52.4 bits (120), Expect = 2e-07
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Frame = +2
Query: 335 LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSI---C 502
L W A+I+GP +PY+ ++ L I +YP +PP V FTT+++ +N SNG I
Sbjct: 38 LTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRN 97
Query: 503 LDILRAQWSPALTISKVLLSI 565
L LR WS + I VL I
Sbjct: 98 LTTLR-NWSNSYMIKTVLEDI 117
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 335 LFHWQATIMGPVDSPYQGGVFFLTIHF-PTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 511
LFH I GPV S Y+GG FF I+ P P+V F T I+HPN+ G+ D+
Sbjct: 63 LFH--VIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLGKYGN--WDM 118
Query: 512 LRAQW 526
QW
Sbjct: 119 RGIQW 123
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 356 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLD 508
I GP D+PY+ GVF + + FP +YP P++ F T I++ + S G + ++
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQVHIE 86
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 30.7 bits (66), Expect = 0.82
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +2
Query: 272 ELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP--PK 445
E ++ R P P + F W I + GG+F IH P ++P P+
Sbjct: 27 EFVEVCRAPIDGIFVSPSANNKFLWFGVIFVR-KGIFGGGIFRFNIHIPLEFPDASDLPR 85
Query: 446 VAF-TTRIYHPNI-NSNGSICLD 508
V F + ++HP I + +CL+
Sbjct: 86 VIFEQSNLFHPLICTKSKELCLN 108
>AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 166 protein.
Length = 363
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 398 FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSIC 568
F I+ P P + ++ +I + +++ + D LR QW P ++ KVL+ C
Sbjct: 300 FCLINNPRSAPSRLLEIISINQILNRQFHASYKL-FDALRKQWDPTMSFQKVLVESC 355
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 395 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSL 574
+ +T+ P +PF PP + T + N L + QW P+ I VL+ CS+
Sbjct: 51 YIVTVAIPPKFPFSPPAITCKT-------DKNMKF-LFLEENQWKPSTGIVAVLIEACSV 102
Query: 575 L 577
+
Sbjct: 103 I 103
>Z81461-6|CAB03837.1| 272|Caenorhabditis elegans Hypothetical
protein C04F12.8 protein.
Length = 272
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 449 AFTTRIYHPNINSNGSICLDILRAQWSP-ALTISKVLLSICSLLCDPNP 592
AF+ Y P+++S S+ LR +SP +L S + L+ L P P
Sbjct: 200 AFSASTYRPSVSSASSLATSSLRRAYSPSSLPASSLALTTSYSLFSPAP 248
>Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical
protein F18E2.2 protein.
Length = 622
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 354 QLWVQLTALIKEEYSF*PYISLQIIHLNHQKLHS 455
Q W + ++ + F + IIHL++QKLH+
Sbjct: 271 QTWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHT 304
>Z69658-2|CAB60997.1| 389|Caenorhabditis elegans Hypothetical
protein C36H8.2 protein.
Length = 389
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 581 HIEVSRLRATLWIWLVLVTIVHAECPGKWNHYCLC 477
+I +L LW WLV V +V KW +Y LC
Sbjct: 270 NIYYEKLFIFLWFWLVFVAVVSTVNCFKWIYY-LC 303
>U59213-1|AAB09672.1| 363|Caenorhabditis elegans transmembrane
protein protein.
Length = 363
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 581 HIEVSRLRATLWIWLVLVTIVHAECPGKWNHYCLC 477
+I +L LW WLV V +V KW +Y LC
Sbjct: 244 NIYYEKLFIFLWFWLVFVAVVSTVNCFKWIYY-LC 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,399
Number of Sequences: 27780
Number of extensions: 296141
Number of successful extensions: 663
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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