Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_N18
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 26 3.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.1
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 4.1
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 25 5.4
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 25 5.4
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 25 7.2
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 7.2
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 9.5
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 9.5
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Frame = +3
Query: 27 LITVVLSALVTRVSLTPLXNNTAVSITSN------DSPPFNNADPVMQLYNSVIVSDYKA 188
LI L ++VSL+P+ + + S+T++ S P + P M+ +S + S ++
Sbjct: 288 LIAQNLHTSASQVSLSPMASTASSSVTNSPVDTHTPSTPIMSRPPSMKALSSGVESQDES 347
Query: 189 AVKTTFQL 212
+ FQ+
Sbjct: 348 VASSNFQV 355
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 45 SALVTRVSLTPLXNNTAVSITSNDSPPFNNA 137
S T S TPL + + + TS S PF N+
Sbjct: 544 STTATSASSTPLTSVNSTTATSASSTPFGNS 574
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 30 ITVVLSALVTRVSLTPLXNNTAVSITSNDSPPFNNAD 140
+T V S T S TP N+T S S + F N +
Sbjct: 555 LTSVNSTTATSASSTPFGNSTITSSASGSTGEFTNTN 591
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 42 LSALVTRVSLTPLXNNTAVSITSNDSPPFNNADPVMQLYNSVIVSDYKAAVKTTF 206
+S VT + TPL N+T ++ S FN + S +S+ A +TF
Sbjct: 597 VSGSVTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTF 651
Score = 24.6 bits (51), Expect = 9.5
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +1
Query: 151 SYTIASSSVTTRLLLKLPFN*KRNAEVTSSAPS*INYSSKDNQTSSNTLTVS 306
S ++ASSS T+ L N +A TSSA S SS + +SN+ T S
Sbjct: 146 SSSLASSSTTSSSLASSSTNSTTSATPTSSATS----SSLSSTAASNSATSS 193
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 66 SLTPLXNNTAVSITSNDSPPFNNADPVMQLYNSVIVSD--YKAAVKTTFQLEKECRSDVI 239
+LTP + A S + +PP +N + + + +++ +K+ V+T E +S+
Sbjct: 205 TLTPYAEDYAFSSLNTSAPPLSNKEYAFSVNHLPAINEHKWKSRVETNMLFELRIKSNDN 264
Query: 240 SSV 248
SV
Sbjct: 265 QSV 267
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 234 VISSVVNKLLLEGQPNVVEYAYSLWY 311
V+ NK+ ++G+PNV + WY
Sbjct: 22 VLIDAFNKVTIDGKPNVQHQQPTYWY 47
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 15 DKMILITVVLSALVTRVSLTPLXNNTAVSITSNDSP 122
D I+ VVLSA V SL P NT V+ ++SP
Sbjct: 97 DGSIVYQVVLSAPVWSASLHPHKINTFVASLLDESP 132
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 375 DPVLITNKRDELALKLELKTDY 440
D + I NKR ALK LK +Y
Sbjct: 231 DSIAILNKRGPYALKYSLKPEY 252
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 7.2
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 495 SWKLYPIWYKNKVY 536
SW+ YP+W + K+Y
Sbjct: 310 SWETYPLWVQVKLY 323
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 9.5
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 12 DDKMILITVVLSALVTRVSLTPLXNNTAVSITSNDSPPFNNADPVM-QLYNSVIVSDYKA 188
DD LIT+ L +L V L +T S TS SPP + P Q + + +S+Y
Sbjct: 675 DDSDALITIALDSLY--VLLNMRAKSTPNS-TSFSSPPTPHRSPFSGQAFTGMGLSNYSL 731
Query: 189 AVKTTF 206
++F
Sbjct: 732 MSSSSF 737
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 477 KTGPKVSWKLYPIW 518
K PKV+WK + IW
Sbjct: 28 KASPKVNWKTHIIW 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,896
Number of Sequences: 5004
Number of extensions: 33848
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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