Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N18
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110...    30   1.4  
07_03_0897 - 22389116-22389600,22389611-22389728                       27   9.6  
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448...    27   9.6  
05_04_0327 + 20298659-20298724,20300119-20300332,20300556-203006...    27   9.6  

>09_04_0606 +
           18909065-18909218,18909674-18909737,18910895-18911023,
           18913680-18913830,18914369-18914491,18915638-18915711,
           18916048-18916591,18916948-18917085,18917159-18917203
          Length = 473

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 141 PVMQLYNSVIVSDYKAAVKTTFQLEKECRSDVISSVV 251
           P + L N +I+SD  A +    + E   + DVI+SV+
Sbjct: 252 PALDLINILIISDASALISFKMKYESFTKGDVINSVI 288


>07_03_0897 - 22389116-22389600,22389611-22389728
          Length = 200

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 33  TVVLSALVTRVSLTPLXNNTAVSITSNDSPPFNNADPVMQLYNS 164
           +V  S L  R +   L + TAVS+ S+ S PF +  P    ++S
Sbjct: 52  SVDFSPLHRRGAAVVLSSRTAVSLLSSSSSPFAHQQPCRPYWSS 95


>05_05_0195 + 23142830-23143714,23144288-23144314,23144657-23144866,
            23144976-23145242,23146290-23146376,23146495-23146553,
            23147166-23147768,23148063-23148192,23148570-23149100,
            23149636-23149743,23149911-23150456,23150957-23151079,
            23151494-23151709
          Length = 1263

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -1

Query: 374  FVKQQSKLYRKVNFDYVLTGSVPETVSVFDDVWLSFEE*FIYDGADDVTSAFLF*LKGSF 195
            + +++ + + ++  DYVLT ++  +V  F  VWL      +   ADD +   L  +KG  
Sbjct: 1001 YERRKGRFFEEI--DYVLTDTIRGSVVDFFTVWLPAPTISVLSYADDGSGESLEFVKGLL 1058

Query: 194  NS 189
             S
Sbjct: 1059 GS 1060


>05_04_0327 +
           20298659-20298724,20300119-20300332,20300556-20300632,
           20301067-20301177,20301283-20301444
          Length = 209

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 231 DVISSVVNKLLLEGQPNVVEYAYSLWYRSGEDIVKVYFPIEFRLLFNEDPVLITNKRDEL 410
           D+IS  + KL   G     E A  +W   G    K        +L   + +L  + RDE 
Sbjct: 31  DIISDELQKLKQHGDGKAEEEADMIWEYQGPQTAKPVETESEDILLEMERLLYEDMRDE- 89

Query: 411 ALKLELK 431
           A+++E++
Sbjct: 90  AIQIEVE 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,962,139
Number of Sequences: 37544
Number of extensions: 200955
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)