Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N13
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    29   0.57 
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   3.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.0  
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    25   7.0  

>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 18  KRRSTDML*KWRAYQKLKVSLLIYLSVFIFDWFR 119
           KR+  D+L +WR+++K+ VS  ++L V   D+ +
Sbjct: 173 KRKVKDLLKQWRSWRKVNVSANMFLPVEEHDYIQ 206


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 356  ILETRSLCKRKNARFLPSYSDIRQTNLMNKI*KTKTYYHSPSRYYSKTER 505
            +++T    KRK  R  P+ S  RQT L   I  TK    +  +   +T R
Sbjct: 1206 VVKTDQPTKRKYNRKAPTKSSTRQTTLDGSISNTKKSSRTKKKKEEETNR 1255


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 291  ILNNIYQPPPCPYGLIFSINE 353
            IL+   +PPPC  GL   +N+
Sbjct: 1643 ILHGFPEPPPCDTGLAAPVNQ 1663


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 401 LPSYSDIRQTNLMNKI*KTKTYYHSPS 481
           LP Y DIR  N + K+ +     H P+
Sbjct: 91  LPIYGDIRDPNTLTKLFEALRLLHEPN 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,060
Number of Sequences: 5004
Number of extensions: 39953
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)