Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_N12
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 30 0.83
01_04_0066 - 15654796-15655098,15655268-15655392,15657249-156576... 30 0.83
12_02_0412 - 18799217-18801061 28 2.5
12_02_0591 + 20864861-20867329 27 4.4
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 27 4.4
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 27 4.4
07_03_0483 - 18605176-18606118,18606353-18606482,18606609-18606738 27 4.4
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 27 5.8
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 5.8
03_06_0244 + 32613914-32614666 27 5.8
08_01_0013 + 99251-100663 27 7.7
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244... 27 7.7
02_01_0623 - 4676847-4676879,4676953-4677115,4677467-4677620,467... 27 7.7
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 29.9 bits (64), Expect = 0.83
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +1
Query: 190 RSCTQLQHCRWRNRLYVQRSDW---CISDRRSHGLHQ 291
RSC QLQ C + V R++W + HGLH+
Sbjct: 105 RSCVQLQECISKGSHQVMRAEWEKYLLGKAELHGLHR 141
>01_04_0066 -
15654796-15655098,15655268-15655392,15657249-15657603,
15658236-15658405,15659404-15659608
Length = 385
Score = 29.9 bits (64), Expect = 0.83
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = -2
Query: 394 HEGCIELLEAGVEIDRGVRTLEE---VQLSVQGVIVTIDEVRVSGGR*CTNLIF--EHIV 230
H+ + +A V +D T E+ LS+ G V I+EV+ + R C ++ + +
Sbjct: 120 HDCFVRGCDASVLLDSASNTAEKNAAPNLSLAGFEV-IEEVKAAVERECAGVVSCADIVA 178
Query: 229 YSATDSVEVGYMSDIWHISGG 167
+A DSV Y +W + G
Sbjct: 179 LAARDSVSYQYRRSLWEVETG 199
>12_02_0412 - 18799217-18801061
Length = 614
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 232 VYSATDSVEVGYMSDIWHISGGESLRCDVV 143
+YS+ +E G D+W+I GG L V+
Sbjct: 23 IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52
>12_02_0591 + 20864861-20867329
Length = 822
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 115 AGSCHLVSEPGDVCIRETY 59
AG CHL EPG V +R +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 27.5 bits (58), Expect = 4.4
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = -2
Query: 364 GVEIDRGVRTLEEVQLSVQGVIVTIDEVRVSGGR*CTNL-IFEHIVYSATDSV-EVGYMS 191
GVE+ GV+ LE +V+ V+ T + R+ +L + ++Y A D + E+ Y
Sbjct: 34 GVELTEGVKKLEFEMRNVEMVLATAEGRRIDKKPLIQSLDVLRELLYDAEDVMDELDYYR 93
Query: 190 DIWHISGGESLRCDVVVIVVEEIHFAGS 107
I GE C E +A S
Sbjct: 94 LQQQIEKGEG--CSAAAANYPEASYASS 119
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 131 HNDXHDITAKAFATRNMPDIAHVPNFNTVGGGIDYMFKDQIG 256
+ND H A++ N P +A N N G ++Y+F D+ G
Sbjct: 377 NNDLHMYHAES----NTPALARTSNLNEELGQVEYIFSDKTG 414
>07_03_0483 - 18605176-18606118,18606353-18606482,18606609-18606738
Length = 400
Score = 27.5 bits (58), Expect = 4.4
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Frame = +2
Query: 11 GAATAGVALDNVNGHGVSLT-DTHIPGFGDKVT----AAGKVNLFHNDXHDITAKAFATR 175
GAA AG ++ + D P D V A G + + H A A A
Sbjct: 159 GAAAAGTTPFTISSPAKAAAYDVAPPALYDVVLPANPAGGMLMAHDHHHHHQVAAAAAPV 218
Query: 176 NMPDIAHVPNFNTVGGGIDYMFKDQIGASATAAHTDFINRNDYS 307
P H N GGG+ F+DQ AA DF+N + S
Sbjct: 219 GYPYADHGGN----GGGVLMSFRDQNAGVHGAASMDFMNGSSSS 258
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 242 KDQIGASATAAHTDFINRNDYSLDGKLNLFKSPD 343
+D + + A T R D +DGKL++ +SPD
Sbjct: 224 EDFVDEAGNAYETACSERRDNDMDGKLHVAESPD 257
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +1
Query: 91 RRQGDSCRQSESLPQRXPRHHSEGFRHQKYARYRSCTQLQHCRWRNRLYVQRSDWCISDR 270
R++ +C S + + + FR K A Y+ C R ++Y++ S W +S +
Sbjct: 309 RQELVNCNVSTTKDWNARIYKQDWFRESK-AGYKDSNLGSQCTHRYKIYIEGSAWSVSQK 367
>03_06_0244 + 32613914-32614666
Length = 250
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 43 CKRPRSKSHGYT-HPRVRRQGDSCRQSESLPQRXPRHHSEG 162
C+R + T PRVR +G + R++ ++ R PR + G
Sbjct: 52 CRRRCGRRESVTGSPRVRPRGRAVREARAVAARTPRRGTPG 92
>08_01_0013 + 99251-100663
Length = 470
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 187 YRSCTQLQHCRWRNRLYVQRSDWCIS 264
+R + CR R +LYVQ W +S
Sbjct: 269 FRDSNLARQCRHRYKLYVQGRSWSVS 294
>04_03_0937 +
20923705-20923833,20924001-20924012,20924413-20924473,
20924523-20924749,20924859-20925104,20925645-20925657,
20927681-20928302,20928320-20928949,20928960-20929224
Length = 734
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 160 GFRHQKYARYRSCTQLQHCRWRNRLYVQRSDW 255
G H + RSC+ +H R R LY+ DW
Sbjct: 254 GGGHYRSRCLRSCSCDEHSRRRRHLYLVLDDW 285
>02_01_0623 -
4676847-4676879,4676953-4677115,4677467-4677620,
4678413-4678554,4678641-4678706,4679389-4679922
Length = 363
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 350 VDFNAGFKKFDTPFMKSSW 406
VDF G+K D FM+S W
Sbjct: 143 VDFEDGYKTMDIKFMESVW 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,012,132
Number of Sequences: 37544
Number of extensions: 262280
Number of successful extensions: 825
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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