Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N11
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           27   1.3  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   1.7  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    26   2.2  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   5.2  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    24   9.0  

>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 126 HDVQYSSKIFKKRVENLYFSLP 191
           +D+ ++S +F+KR  + YFS P
Sbjct: 309 YDLFFASPVFRKRTSSFYFSQP 330


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 209 R*NDSGYPRIR*DQFGSISKRDAGRPRLQLHEPSHEERPRTGNTLRRICLRLNLR 373
           R +D  Y  +R D      KR   RPR +  + S EER R    + ++  RL  R
Sbjct: 200 RAHDYDYEDLRDDDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSR 254


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 144 SKIFKKR-VENLYFSLPSVPTNYGRTIQGILAYDK 245
           SKIF K  V+NLY + P +  +YG  +    ++ K
Sbjct: 261 SKIFTKSPVKNLYLNWPQLVLDYGSLLCNFTSFPK 295


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 216 TIQGILAYDKTNSGASANVTQGGLGYNFMNLR 311
           +I+GI  YD     A  + T GG+G N  N+R
Sbjct: 227 SIEGI--YDTLKMCAMISKTAGGIGINIHNIR 256


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 129 DVQYSSKIFK--KRVENLYFSLPSVPTNYGRTIQG 227
           D + SS I K    ++ +  S PSVPT+  R  QG
Sbjct: 43  DTEESSAIDKLSASLQQVNISSPSVPTSQSRVTQG 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,357
Number of Sequences: 5004
Number of extensions: 31308
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)