Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N11
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1115 + 24394944-24396628,24397347-24397386,24397970-243980...    30   0.95 
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    28   3.8  
01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318     27   5.1  
06_01_0772 + 5770502-5770619,5771035-5772335                           27   6.7  

>08_02_1115 +
           24394944-24396628,24397347-24397386,24397970-24398005,
           24398541-24398574,24398823-24398896
          Length = 622

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -2

Query: 260 CSRIGLIVCEDTLNRSTVVSRYTRQRKIQILNSLLEYFRT---VLYIVMVDERSQHASTQ 90
           C ++G   C D    S +V  Y R++ ++    + +       VLY  MVD  ++    +
Sbjct: 238 CIKVGF--CRDAKVASAMVGMYVREKSVECGRKVFDEATKRDLVLYNCMVDGYAEAGQVE 295

Query: 89  ERVGTID 69
           E +G +D
Sbjct: 296 EAMGLVD 302


>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 195 VPTNYGRTIQGILAYDKTNSGASANVTQGGL 287
           V    G   Q +L YD+TN+GA + VT   L
Sbjct: 431 VAKGLGTVKQAVLEYDQTNTGAVSGVTPRAL 461


>01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318
          Length = 878

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = -2

Query: 257 SRIGLIVCEDTLNRSTVVSRYTRQRKIQILNSLLEYFRTVLYIV 126
           SR+ L+  + TL   T ++R   +  ++I+N+L +  + V++IV
Sbjct: 607 SRVILLDYDGTLVPQTTINRTPNESVVKIMNALCDDKKNVVFIV 650


>06_01_0772 + 5770502-5770619,5771035-5772335
          Length = 472

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 112 GLNTLVPKNVWVQSTITINVIKDTSNSSFIF 20
           GLN L  + +   S+  I+VI+D+S + F+F
Sbjct: 84  GLNNLQEEEITSSSSTKIDVIEDSSINDFLF 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,808,952
Number of Sequences: 37544
Number of extensions: 175538
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)