Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N11
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical p...    27   4.6  
U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    27   8.0  
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical
           protein T11F9.18 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 81  HTFLGTSVLRPLIYHHDVQYSSKIFKKRVENLYFSLPS 194
           H F+ TS +  L   ++     K FK ++EN Y  LPS
Sbjct: 137 HYFMMTSCMCLLAASYNHLADQKAFKTKIENKYGELPS 174


>U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical
           protein C05E11.7 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = +3

Query: 117 IYHHDVQYSSKIFKKRVENLYFSLPSVPTNYGRTIQGILAYDKTNSGASANVTQGGLGYN 296
           I  H +  +S       +N+Y +LP     Y R  +   A + TN+ A+           
Sbjct: 234 IQEHPMVLTSPATPSTADNIYIALPEQTNVYLRPQRPTFAANLTNNNAAQLYPNQVELQE 293

Query: 297 FMNLRMKSDRGREIHYD 347
             N+  K D G+++ Y+
Sbjct: 294 KSNIWNKGDYGQKVQYN 310


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
            protein Y20C6A.1 protein.
          Length = 984

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 24/87 (27%), Positives = 38/87 (43%)
 Frame = +3

Query: 87   FLGTSVLRPLIYHHDVQYSSKIFKKRVENLYFSLPSVPTNYGRTIQGILAYDKTNSGASA 266
            FL   V    I   D+ Y  +IFK    N  F++ S   + G  +  +        GAS+
Sbjct: 873  FLKVEVTLRTISVEDLVYLKEIFKTSSANRNFNIKSRSFDAGDLVPTL--------GASS 924

Query: 267  NVTQGGLGYNFMNLRMKSDRGREIHYD 347
            + T+ G+ +     +MK DR R +  D
Sbjct: 925  SDTKEGVIHKKWFFKMKIDRQRAVCID 951


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
            protein Y20C6A.1 protein.
          Length = 984

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 24/87 (27%), Positives = 38/87 (43%)
 Frame = +3

Query: 87   FLGTSVLRPLIYHHDVQYSSKIFKKRVENLYFSLPSVPTNYGRTIQGILAYDKTNSGASA 266
            FL   V    I   D+ Y  +IFK    N  F++ S   + G  +  +        GAS+
Sbjct: 873  FLKVEVTLRTISVEDLVYLKEIFKTSSANRNFNIKSRSFDAGDLVPTL--------GASS 924

Query: 267  NVTQGGLGYNFMNLRMKSDRGREIHYD 347
            + T+ G+ +     +MK DR R +  D
Sbjct: 925  SDTKEGVIHKKWFFKMKIDRQRAVCID 951


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,032,381
Number of Sequences: 27780
Number of extensions: 169224
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)