Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N10
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0130 + 13790349-13790431,13790590-13790704,13790832-13791053     29   1.5  
11_04_0145 + 14082864-14082946,14083060-14083267,14083383-140835...    29   2.0  
10_01_0099 - 1202668-1203023,1203097-1206037                           27   8.2  

>11_04_0130 + 13790349-13790431,13790590-13790704,13790832-13791053
          Length = 139

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 370 NIMTTNFSNCFHMSKSKY 317
           ++M TNF +CFHMS+  Y
Sbjct: 88  SLMATNFESCFHMSQLAY 105


>11_04_0145 +
           14082864-14082946,14083060-14083267,14083383-14083599,
           14084170-14084276,14085521-14085674,14086848-14087029
          Length = 316

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 367 IMTTNFSNCFHMSKSKY 317
           +MTTNF +CFH+S+  Y
Sbjct: 120 LMTTNFESCFHLSQLFY 136


>10_01_0099 - 1202668-1203023,1203097-1206037
          Length = 1098

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 215 ILRLNNNHYKSYVPSNLG 162
           +LR+NNNH+   +P+ +G
Sbjct: 618 LLRINNNHFSGNLPATIG 635


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,892,987
Number of Sequences: 37544
Number of extensions: 154323
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)