Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_N06
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0215 + 6505231-6505554,6506786-6507682 34 0.091
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298... 31 0.48
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042 31 0.85
11_06_0265 - 21788531-21789798,21789914-21789947 29 2.0
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 29 2.6
07_03_0216 + 15286968-15286970,15287068-15287213,15288333-152883... 28 4.5
01_06_0486 - 29729333-29729356,29729856-29730106,29730364-297304... 28 4.5
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 28 6.0
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 27 7.9
03_05_1016 + 29726949-29727503,29728863-29729504 27 7.9
03_02_0563 + 9471025-9471093,9471490-9471601,9471944-9472255,947... 27 7.9
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682... 27 7.9
02_02_0712 + 13200174-13200761,13201966-13202616 27 7.9
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893... 27 7.9
01_06_1740 - 39575614-39576981 27 7.9
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 27 7.9
>03_02_0215 + 6505231-6505554,6506786-6507682
Length = 406
Score = 33.9 bits (74), Expect = 0.091
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -1
Query: 432 GSRRSWISRHLKRKRHLPYPLANTSTGCYHLNTVSSVSIHQRRWDY----FLVXRRRVCK 265
GS W S +R H + +N ++ LNT +H RW++ F++ ++ + K
Sbjct: 75 GSFVIWDSHAFERDLHRHFKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGFIMGQKHLLK 134
Query: 264 TLRRNRPS 241
T++R + S
Sbjct: 135 TIKRRKKS 142
>03_02_0658 +
10228794-10228943,10229042-10229105,10229510-10229805,
10230689-10230904,10231409-10231549,10232407-10232499,
10234010-10234108,10234198-10234227,10234274-10234360,
10234636-10234689,10234758-10234835,10235128-10235202,
10236265-10236356,10236433-10236490,10236590-10236664,
10236966-10237013,10239003-10239065,10239167-10239258,
10239693-10239761,10239867-10239930,10240007-10240072,
10240170-10240271
Length = 703
Score = 31.5 bits (68), Expect = 0.48
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +3
Query: 39 VFHEVYGKKKTPKYAVAVV---KKGTSYTKIDDLRGKRSCHNSFGTFS-GLHAPLYYLIN 206
V ++YG K+ K A+ +V +G ++T R R + F+ G + L + IN
Sbjct: 303 VADQMYGPKEDRKLAIVLVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGIN 362
Query: 207 KKAINTGECVKNLADFFGGSCIPGVD 284
+ +++ V+ ADFF G GV+
Sbjct: 363 QTSLSASNSVEQTADFFRGDNKEGVE 388
>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
Length = 819
Score = 30.7 bits (66), Expect = 0.85
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Frame = -1
Query: 567 RLRRRKGN--PWRTTKF*ME--TWLCYMWHSWRTSPVLRRRGSGRAVRTG---SRRSWIS 409
RL+ G+ PW +F E + Y +++W+ +RR + ++ +TG SR+ S
Sbjct: 40 RLQAATGDYTPWLGQEFASEHEAYEFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCS 99
Query: 408 RH-----LKRKRHLPYPLANTSTGCYHLNTV 331
R KR H P +T TGC H N V
Sbjct: 100 REGFKAPDKRTNHTRTPQPDTRTGC-HANLV 129
>11_06_0265 - 21788531-21789798,21789914-21789947
Length = 433
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +3
Query: 333 QCSSDNSPWKCLQEDR--GDVAFVSSADLSNFDESQYEQL 446
+ S +++PWK +++ G+ F+SS+ +F SQYE++
Sbjct: 333 ELSFNSNPWKWIEKKSLDGESIFISSSCNKSFAASQYEEI 372
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +1
Query: 64 RRLRNTPWPSSRKEPRTPRSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPSTPVNASKT 243
RR N PW +K P+ R +Y +P+ S L+ IKK + K
Sbjct: 67 RRGHNLPWKLKQKNPKEARRRVYLCPEPSCVHHDPSRALGDLT---GIKKHYCRKHGEKK 123
Query: 244 W 246
W
Sbjct: 124 W 124
>07_03_0216 +
15286968-15286970,15287068-15287213,15288333-15288335,
15288514-15288697,15289772-15289824,15290118-15290206,
15291270-15291506,15293494-15293687,15293774-15293834,
15293905-15294022,15294093-15294174,15295212-15295337,
15295435-15295530,15295945-15296099,15296706-15296802,
15296926-15297003,15297085-15297192
Length = 609
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 266 RPSEEIGQVFDAFTGVDGFFIDKVVE 189
+P E + V DA G GFF+DKV++
Sbjct: 283 KPLEGLHIVVDAGNGAGGFFVDKVLK 308
>01_06_0486 -
29729333-29729356,29729856-29730106,29730364-29730466,
29730571-29730663,29730773-29730905,29731184-29731272,
29731385-29731553,29731930-29732016,29732388-29732506,
29732554-29732706
Length = 406
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 513 TWLCYMWHSWRTSPVLRRRGSGRAVRTGSRRSWISRHLKRKRHLPYP 373
TWL + H+ V R + G RSW+ + + R LP P
Sbjct: 102 TWLIWKEHNESLRGVQSLRNTAPVAEKGKLRSWVGPNGQYYRELPCP 148
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 411 LSNFDESQYEQL-CLNRDAGGRDSFSNYATCNIAM-SPSRTWLS 536
+ +FDE++ L LN+DA ++ +N CN+ + PS +LS
Sbjct: 214 MGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKPSSRYLS 257
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.5 bits (58), Expect = 7.9
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 2/143 (1%)
Frame = +1
Query: 70 LRNTPWPSSRKEPRTPRSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPSTPVNASKTWP 249
++ P ++ P TP + A + S +A T T+ +PSTP + S+ P
Sbjct: 141 VKTRPSTPTKTRPSTP----VRTRQTANSTSDSAAART---TSAQNSRPSTPTSRSRAMP 193
Query: 250 ISSEGLAYPASXNQKIIPTALMYRN*RNSVQVITARGSVCKRIGEMS--LSFQVPTYPXX 423
SS G A PA + R+ +++ + GS + +S S T P
Sbjct: 194 NSSSG-AIPAMSRPGASTISATSRSNASTISATSRPGSSSSNVPGISRATSLSSSTVPSM 252
Query: 424 XXXXXXXXXXXXXPEDGTRSPTM 492
P + +P +
Sbjct: 253 SRSSSRSSTPTRQPAMRSSAPAV 275
>03_05_1016 + 29726949-29727503,29728863-29729504
Length = 398
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 184 HLSTTLSIKKPSTPVNASKTWPISSEGLAYPASXNQKIIPTALMYR 321
+ T L+I+ P + N S TW S G A+PA+ + I + R
Sbjct: 310 YFPTMLTIEAPQSLANRSITWVDWSRGGAHPATFGRGDITEEFLRR 355
>03_02_0563 +
9471025-9471093,9471490-9471601,9471944-9472255,
9472341-9472783
Length = 311
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 157 PSGRSAVFTHLSTTL-SIKKPSTPVNASKTWPISSEGLAYPASXNQKIIPTALMYRN 324
PSG+ VF HL ++L ++ + S V K W I + +YP KII + N
Sbjct: 200 PSGKKEVFNHLHSSLRNVIERSFGVLKMK-WRILLDLPSYPMLKQTKIIHACMALHN 255
>02_05_0880 +
32466538-32467083,32467333-32467644,32467731-32468201,
32468481-32469246,32469332-32469774
Length = 845
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 157 PSGRSAVFTHLSTTL-SIKKPSTPVNASKTWPISSEGLAYPASXNQKIIPTALMYRN 324
PSG+ VF HL ++L ++ + S V K W I + +YP KII + N
Sbjct: 734 PSGKKEVFNHLHSSLRNVIERSFGVLKMK-WRILLDLPSYPMLKQTKIIHACMALHN 789
>02_02_0712 + 13200174-13200761,13201966-13202616
Length = 412
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 184 HLSTTLSIKKPSTPVNASKTWPISSEGLAYPA 279
+L T L I+ PS N S TW S G +PA
Sbjct: 322 YLPTFLGIRHPSRVTNRSVTWVDWSHGGPHPA 353
>02_02_0322 -
8938101-8938149,8938235-8938458,8938545-8938605,
8938724-8940761,8940797-8940908,8942037-8942047,
8942293-8942443
Length = 881
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 445 SCSYWLSSKLDKSALETKATSPLS 374
SCS+ L KLD S L+ A SP+S
Sbjct: 515 SCSHALVVKLDGSRLDVSAPSPIS 538
>01_06_1740 - 39575614-39576981
Length = 455
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 79 TPWPSSRKEPRTPRSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPST 222
TPW + P P ++ E ++P + P G L T SI++ ST
Sbjct: 121 TPWSAPAGHPAPPAAVPEEPQEPRLGPPGLKPA-KILDTHKSIERTST 167
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 88 PSSRKEPRTPRSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPSTPVNASKTWPISSEGL 267
P S R P +I + + + +P+GR + L S PS+ V+ + P SSE L
Sbjct: 306 PPSLYPQRVPPHLIVQQQQSSPSPTGRGSPVARLRAGHSPATPSSDVSMEDS-PSSSELL 364
Query: 268 A 270
A
Sbjct: 365 A 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,646
Number of Sequences: 37544
Number of extensions: 393659
Number of successful extensions: 1245
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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