Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N04
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    60   2e-10
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    50   2e-07
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    48   9e-07
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    44   2e-05
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    41   1e-04
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    34   0.012
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    29   0.61 
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    28   0.81 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   2.5  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   5.7  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   10.0 

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 28/60 (46%), Positives = 40/60 (66%)
 Frame = +3

Query: 162 CKMIGPKLDEMANEMSDSIVVLKVDVDECEDIAAEYNINAMPTFVFVKATKKLEEFSGAN 341
           CK I PK ++ +N  SD+  + KVDVD+  +IAAE  ++AMP+F   K  +K+EE  GAN
Sbjct: 33  CKAIAPKFEQFSNTYSDATFI-KVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +3

Query: 162 CKMIGPKLDEMANEM-SDSIVVLKVDVDECEDIAAEYNINAMPTFVFVKATKKLEEFSGA 338
           CK I P   ++A++  S   V  KV+VDE   IA+   + AMPTFVF +  K+++  +GA
Sbjct: 34  CKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGA 93

Query: 339 N 341
           N
Sbjct: 94  N 94


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 48.0 bits (109), Expect = 9e-07
 Identities = 21/60 (35%), Positives = 35/60 (58%)
 Frame = +3

Query: 162 CKMIGPKLDEMANEMSDSIVVLKVDVDECEDIAAEYNINAMPTFVFVKATKKLEEFSGAN 341
           CK +    D+ A +  ++ V LK++ ++  DIA  +++NA+P FV +   K L   SGAN
Sbjct: 35  CKQMNQVFDQFAKDTKNA-VFLKIEAEKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 162 CKMIGPKLDEMANEMS-DSIVVLKVDVDECEDIAAEYNINAMPTFVFVKATKKLEEFSG 335
           CK + P+ +  A+E+  D I +++VD  E  D+ +EY+I   PT    K  K++ ++SG
Sbjct: 54  CKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 26/98 (26%), Positives = 50/98 (51%)
 Frame = +3

Query: 51  VQNVDPHQGLDDLKTRLSEAGDKLVXD*LHGDXGADXCKMIGPKLDEMANEMSDSIVVLK 230
           ++ V+  +   D  TR+S   DK+     + D     CK + P L++++ E +     + 
Sbjct: 16  LRKVNAVESFGDYNTRIS--ADKVTVVDFYADW-CGPCKYLKPFLEKLS-EQNQKASFIA 71

Query: 231 VDVDECEDIAAEYNINAMPTFVFVKATKKLEEFSGANV 344
           V+ D+  DIA +  + A+PT V  +  ++L+   GA+V
Sbjct: 72  VNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 162 CKMIGPKLDEMANEMSD--SIVVLKVDVDECEDIAAEYNINAMPTFVF 299
           CK + P  +E+     D   +++ K+D D   D+A +Y+I   PT ++
Sbjct: 54  CKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIW 101


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 162 CKMIGPKLDEMANEMSDSIVVLKVDVDECED--IAAEYNINAMPTFVFVKATKKLEEFSG 335
           CK + P   ++A+ +   + V  VD D  ++  + ++Y +   PT   V  + K    S 
Sbjct: 63  CKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSS 122

Query: 336 AN 341
            +
Sbjct: 123 TD 124


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 156 DXCKMIGPKLDEMANEMSDSIVVLKVDVDECEDIAAEYNINAMPTFVFVK 305
           D C  +      MAN M   + V  ++    +    +Y+I   PTF+F K
Sbjct: 311 DDCDDVSTAWYAMANRMRGKLNVAHINCAVSKRACKQYSIQYFPTFLFFK 360



 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 162 CKMIGPKLDEMANEMSDSIVVLKV---DVDECEDIAAEYNINAMPTFVFVKATKKLEE 326
           CK +GP  D M  +  + +        +VD  +++++  NI A+PT    +  + +EE
Sbjct: 57  CKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVEE 114


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/79 (17%), Positives = 35/79 (44%)
 Frame = -1

Query: 365 DGVLEXVDVRAGELFEFLGRLNKHESRHRVDVIFGGDVFAFVNVDLKNNNGVGHFVSHLV 186
           DGV +   ++  ++   +GR     ++   D+I   D FA +   ++   G+ + + + +
Sbjct: 627 DGVNDAPALKLADIGIAMGRQGTDVAKEAADMILTDDSFATILSAVEEGKGIFNNIKNFI 686

Query: 185 EFGPDHLAXVRTXVAMKSI 129
            F         + +A+ S+
Sbjct: 687 TFQLSTSVAALSLIAISSV 705


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 45  LKVQNVDPHQGLDDLKTRLSEAGDKL 122
           L+   +D  +  DDL  +L+EAGD+L
Sbjct: 22  LEEDGIDFEETYDDLGNQLNEAGDEL 47


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 240 DECEDIAAEYNINAMPTFVFVKATKKL 320
           D+CE+  AE+       F+F+K  ++L
Sbjct: 518 DQCEEFVAEFRQTEEKYFLFLKRLREL 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,196
Number of Sequences: 5004
Number of extensions: 29404
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)