Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N03
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457740-10|CAM36340.1|  351|Caenorhabditis elegans Hypothetical...    30   1.0  
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    29   3.1  
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    27   9.5  

>CU457740-10|CAM36340.1|  351|Caenorhabditis elegans Hypothetical
           protein C50E10.10 protein.
          Length = 351

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -1

Query: 551 KN*KKECID-CMYLRPLLVSILTL*Q*RLYKHFFLQNRLLFKG*KNNRL 408
           KN   +CI+ C++L PLL+  +TL     +K+ F Q+  +F+  +N  +
Sbjct: 279 KNPMAQCIENCIFLNPLLICSVTLFSVPAWKNEFCQSIPIFRKFRNESI 327


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 443 DFVKKSVYTVFIVIMLISKQVKAVNTYSQYILFFSF 550
           D+ KKS + + + I+L+ +    V  Y  ++ +FSF
Sbjct: 165 DYEKKSRFWIAVAIVLVDQMFNLVVAYLFFLFYFSF 200


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 34  YFINKKTYLL*QCFEIHLRMLPYIPEYRDFSRIFLLIQIMIVMVHRVYFVLNLIML 201
           Y++  +   L + FE    MLP +P+    S+IF+L      +V  V+F+  L++L
Sbjct: 153 YYVPDQKQALQEVFE----MLPELPKELQTSKIFVLATDFRFIVLPVFFMSTLLLL 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,741,108
Number of Sequences: 27780
Number of extensions: 202915
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)