Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_N01
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   5.1  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   6.7  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    25   6.7  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   8.9  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 459 KRNKFAKHFGLLSLIRHLKNQGSKTKEKGVSIVS*SVNRRIDQFHRRMFRR 611
           K +K  KH   L L R  K+     KEK  S+     +  +   H  +F++
Sbjct: 250 KHDKHEKHHSSLDLRRFFKSHQKTDKEKKPSVSKSKSSANLQDDHFGLFKK 300


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 188 IFS*FFYLNAVLHQNLALHENLGG*VVTEGIEAKPKTLKVMIEEIN 325
           +FS   Y +A+L QN  LH N+      E +E K    K + + +N
Sbjct: 239 LFSVKRYSDALLRQNEQLHRNVKINYKDELVEVKGSERKAVFKNLN 284


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 411 DILTFWHQLARAHFTRTLTLLTRA 340
           ++L  WHQL      + LTLL+RA
Sbjct: 55  NLLDLWHQLIPGTKEKCLTLLSRA 78


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 7   FSKSDLTKYCLKLSREFLSSSFCEN--NYFA 93
           F K+D+TK  L   + F  ++F EN  N++A
Sbjct: 208 FDKTDMTKPNLSSYKTFFETNFIENTKNFYA 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,850
Number of Sequences: 5004
Number of extensions: 45227
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)