Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_M23
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 29 0.47
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 1.9
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.5
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 4.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.4
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 26 4.4
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 26 5.8
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.6
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 25 7.6
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 7.6
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr... 25 7.6
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 29.5 bits (63), Expect = 0.47
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = -1
Query: 360 RPALQC-TFMHGSSRLISLS----GASRDSFRISETRALQLRNRLSSRLPHA-VLEVL-R 202
R + C + M S LI+ S G +R R R LQ RNRL ++PH+ +L V R
Sbjct: 326 RHNIDCVSIMDKSGNLINCSKEVNGMNRLKARSKIVRLLQQRNRLVEQVPHSLILSVCSR 385
Query: 201 LGDV 190
GDV
Sbjct: 386 TGDV 389
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 465 VSLKFVHTLRLESVSYGHSLMQLQIAS 385
VS +F H LRL+ V+ H + +IAS
Sbjct: 291 VSTRFSHELRLKPVAVAHGIKNSEIAS 317
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -2
Query: 218 FSRCSDSEMSPRGSRDVXXXXXXXXXXXXXRCFWTGVDRADDGDHEPR 75
F+ + E+ P+ +RDV FW+ VD D G H R
Sbjct: 43 FAEWQNHELHPK-TRDVSTLDWIFLVDILNFSFWSDVDVEDSGKHSKR 89
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 517 LGAVPRGAVPPRADRVLRDLQG 582
LG V RG +P DR+L LQG
Sbjct: 476 LGHVQRGGIPCAYDRMLATLQG 497
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = -3
Query: 268 TSSSAPESSLVQASPCRSRGAPTRRCPRGEAATSPLXXXXXXXXXXXXVFGLASTVQMTA 89
TSSSA SSL +S S A + A++S +ST +
Sbjct: 110 TSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSST---NS 166
Query: 88 TTSLVPNSAA 59
TTS P S+A
Sbjct: 167 TTSATPTSSA 176
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -3
Query: 301 SIA*LIQDLGDTSSSAPESSLVQASPCRSRGAPTRRCPRGEAA 173
S+ L Q D SSS +SS V+ RSRGA + R E+A
Sbjct: 236 SVIVLPQVSNDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESA 278
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 216 ERHGEAWTRDDSGAEELVSPRS*MSHAMLLTMKSILTIRA*KCTAA 353
++HG AW D + A+ ++PR+ + L + LT+ A K A
Sbjct: 196 KQHGIAWEEDPTNADINLTPRN--AIRRFLNQHAALTVEATKLATA 239
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 7.6
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = +2
Query: 347 CSAGRVCEINEHGEAICNCIKEC 415
C+A R+C++ E C+ +C
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 7.6
Identities = 22/96 (22%), Positives = 33/96 (34%)
Frame = -3
Query: 298 IA*LIQDLGDTSSSAPESSLVQASPCRSRGAPTRRCPRGEAATSPLXXXXXXXXXXXXVF 119
+A LGDT S +L C + PT++ P G +
Sbjct: 104 VADAAHQLGDTLSDLV--TLATLKICSKK--PTQKYPAGFGKWETIGTFTVSGLLVAVSV 159
Query: 118 GLASTVQMTATTSLVPNSAARGIHVRRRHPVSSSLF 11
G+A + T L P + + H+ H S LF
Sbjct: 160 GIAHSSLSRLYTILFPYAGSEHTHIGHSHNPSQLLF 195
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +3
Query: 219 RHGEAWTRDDSGAEELVSPRS*MSHAMLLTMKSILTIRA*KCTAAPAVSVRSTSTGKLSA 398
R+G + + +++SP L + T R + ++P+ + STST S+
Sbjct: 423 RYGNFYVNFEVTIPKILSPHERSLLEQLADALNDSTAR--RTQSSPSGTNSSTSTSSTSS 480
Query: 399 TASRSVHTKPTLGARCAQTSTRPG 470
S + T+PT G Q + G
Sbjct: 481 KHSTGISTEPTTGEENKQDGSVGG 504
>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 317 NLDDPCMKVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNE 463
NL K++ G + + HG I CIK+ + + K T FNE
Sbjct: 105 NLHKGAAKIYSMGGVIAAVC-HGPVILPCIKDSTGFSIVKGKTVTAFNE 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,184
Number of Sequences: 5004
Number of extensions: 54275
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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