Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_M22
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0581 + 18930601-18930777,18930856-18930965,18931037-189313... 31 0.47
06_03_0505 + 21545547-21545813,21546075-21546167,21546535-215467... 31 0.82
09_06_0081 + 20745627-20748144,20748211-20748308 29 2.5
08_01_0664 + 5741111-5741113,5741491-5741658,5741741-5741864,574... 29 2.5
02_05_0979 + 33268294-33269595 29 3.3
03_06_0438 - 33917678-33918084,33929568-33930402,33931055-339313... 28 4.4
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 28 4.4
07_01_0142 + 1054495-1054644,1054767-1055971,1056102-1056180,105... 28 5.8
02_02_0450 - 10381360-10381391,10381737-10382283,10382770-103829... 28 5.8
09_04_0440 - 17605405-17605476,17605558-17605629,17606014-176062... 27 7.7
01_01_0003 + 11774-12813,12906-13271,13359-13437,13840-13968,139... 27 7.7
>10_08_0581 +
18930601-18930777,18930856-18930965,18931037-18931307,
18931403-18931541,18932410-18932630,18932723-18932769,
18933390-18933755,18934049-18934127,18934697-18934890,
18935305-18935422
Length = 573
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +3
Query: 195 MQNFHMDGHQWWDIGYHFG---VSSDGTVYEGRG--WSTLGAHALHFNSVSIGICLIGDW 359
MQ++HMDG+ ++ +G +G S GT +G G ST+ + + +V + + +G W
Sbjct: 430 MQSYHMDGYAFFVVGMDYGEWTEDSRGTYNKGDGVARSTVQVYPGAWAAVLVSLDNVGVW 489
Query: 360 RV 365
V
Sbjct: 490 NV 491
>06_03_0505 +
21545547-21545813,21546075-21546167,21546535-21546747,
21548933-21549124,21549217-21550197
Length = 581
Score = 30.7 bits (66), Expect = 0.82
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = +3
Query: 120 YVVIHHSYIPAACHTRETCCKAMRSMQNFHMDGHQWWDIGYHFG 251
YV+ H++ + + + + +H+ GH +W +GY G
Sbjct: 445 YVLAHNATVDVVLQNANALARNVSEVHPWHLHGHDFWVLGYGDG 488
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 160 WHAAGM*EWWITTYGTGVFRG 98
WH G ++W+ YG G FRG
Sbjct: 473 WHLHGH-DFWVLGYGDGAFRG 492
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 36 SYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIP 149
S+D+ VS S + P +L L++P P++ + H P
Sbjct: 472 SFDYDGVSSSSSTPHVPTTSLALRSPAPHLRVRHMPAP 509
>08_01_0664 +
5741111-5741113,5741491-5741658,5741741-5741864,
5742078-5742169,5742254-5742352,5742476-5742589,
5743190-5743254,5743342-5743467,5743870-5743945,
5744502-5744594,5744944-5744994,5745084-5745182
Length = 369
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -2
Query: 314 QRMCA*SRPSSPLVYCSIAADAKMVSNIPPLMTVHMEVLHTPHGFTASLSSVACRWYVR 138
+R+ A P YC+ A+ IP ++ +H + FTA V C W +R
Sbjct: 239 ERLLADMPPDEAAKYCAENQIARQAIVIPKIIKTGFAAIHLIYFFTAGPDEVKC-WQIR 296
>02_05_0979 + 33268294-33269595
Length = 433
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 230 PPLMTVHMEVLHTPHGFTASLSSVACRWYV--RVVDNHIRY-WSFQRQGLVWLPRT 72
PP+ + M H PHG L+S +C V ++ +H Y W+ + ++ LP T
Sbjct: 102 PPVEEI-MTARHLPHGTIFPLASKSCHGLVLLKITGHHTHYLWNPSTRHILRLPGT 156
>03_06_0438 -
33917678-33918084,33929568-33930402,33931055-33931335,
33931358-33931451,33931549-33931857
Length = 641
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 141 YIPAACHTRETCCKAMRSMQNFHMDGHQWWDIGYHFGV 254
Y+P + ET S +F + WWD+G GV
Sbjct: 229 YLPCRMSSSETSSSTSSSGTHFRDEWSTWWDMGAIVGV 266
>03_05_0884 - 28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 372 PPADQIKATKSLIAAGVELGYISPQYKLVGHRQVRATECPGDALYENIKTWTHYSXFPSS 551
P D ++A +IA + LG+ ++++V H + G L +K+ TH+S P++
Sbjct: 1163 PEKDPVEA---IIAHRLWLGFFIDRFEVVRHDSIEQLLLLGRMLQGTMKSATHFSHHPAA 1219
>07_01_0142 +
1054495-1054644,1054767-1055971,1056102-1056180,
1056619-1056822
Length = 545
Score = 27.9 bits (59), Expect = 5.8
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 195 MQNFHMDGHQWWDIGYHFG 251
+Q++H+DG+ +W +GY G
Sbjct: 438 LQSWHLDGYDFWVVGYGNG 456
>02_02_0450 -
10381360-10381391,10381737-10382283,10382770-10382952,
10383123-10383863
Length = 500
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = -3
Query: 427 SSTPAAMRDLVALI*SAGGNETRQSPIRQMPMLTELKC--SACAPKVDHPLPSYTVPSLL 254
++T AA +LVA + G + ++PM +KC S P ++HP + P+
Sbjct: 219 ATTAAASMELVAARNAIGATDINNLDHPKVPMKCSMKCTESDNKPLMEHPKKNPWPPAWS 278
Query: 253 -TPKWY----PISHH 224
KWY I+HH
Sbjct: 279 GWKKWYMTWTAINHH 293
>09_04_0440 -
17605405-17605476,17605558-17605629,17606014-17606277,
17607106-17607510
Length = 270
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 77 EATKPDLASENSSTVCGYPPLLHTSGMPH*RDLL*SHEEYAELPYGRSSMVGYWI 241
E+ +++S N + CG P L T+ M L S Y L YG S++V WI
Sbjct: 163 ESISSNVSSINDALYCGSP--LQTTLMQ-----LDSENSYTALVYGTSALVTIWI 210
>01_01_0003 +
11774-12813,12906-13271,13359-13437,13840-13968,
13969-14171,14266-14359
Length = 636
Score = 27.5 bits (58), Expect = 7.7
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = +3
Query: 192 SMQNFHMDGHQWWDIGYHFGVSSDGT 269
S+Q++H+DG+ ++ +G +G+ +D +
Sbjct: 454 SVQSYHLDGYAFFVVGMDYGLWTDNS 479
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,635
Number of Sequences: 37544
Number of extensions: 402053
Number of successful extensions: 1240
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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