Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_M22
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 411 AAGVELGYISPQYKLVGHRQVRATE 485
           + GV      PQ+K++GHRQ RA E
Sbjct: 176 SVGVSNEVSLPQFKVLGHRQ-RAME 199


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 411 AAGVELGYISPQYKLVGHRQVRATE 485
           + GV      PQ+K++GHRQ RA E
Sbjct: 115 SVGVSNEVSLPQFKVLGHRQ-RAME 138


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 390 KATKSLIAAGVELGYISPQYKLVGHRQVRAT 482
           K    L + G+      PQ++++GHRQ  +T
Sbjct: 169 KWNAGLQSVGISNEVELPQFRVLGHRQRHST 199


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 90   QTLPLKTPVPYVVIHHSY 143
            Q LP  +P P + ++H+Y
Sbjct: 1283 QQLPPSSPQPRLTVNHAY 1300


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = +3

Query: 222 QWWDIGYHFGVSSDGTVYEGR 284
           +W+D+G ++ + S+  +Y+ +
Sbjct: 55  EWYDVGRNYDMESNMDMYKDK 75


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = +3

Query: 222 QWWDIGYHFGVSSDGTVYEGR 284
           +W+D+G ++ + S+  +Y+ +
Sbjct: 55  EWYDVGRNYDMESNMDMYKDK 75


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 215 RSSMVGYWIPFWRQ 256
           R +    WIP WRQ
Sbjct: 415 RQTQTEVWIPKWRQ 428



 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 126 PHTVLEFSEARSGLVASHSTANDS 55
           P T+++ S  RS L+      N+S
Sbjct: 371 PETIIDVSRRRSSLICDVYGVNES 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,660
Number of Sequences: 438
Number of extensions: 3764
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)