Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_M18
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po... 59 4e-10
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.36
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 27 1.5
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 1.5
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 1.9
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 1.9
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 27 1.9
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 27 1.9
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 26 3.4
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 3.4
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 5.9
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 5.9
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 7.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.8
>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 171
Score = 58.8 bits (136), Expect = 4e-10
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +2
Query: 245 YDYVKKATKDKNVLLIDVREPDELKEHGIIPNSVNIPCSVTSVLSSMTEKEFQQIFNRKK 424
Y+ K+ T DK+ +LIDVREPDE K+ G I S N+P ++++EF + + K
Sbjct: 64 YNLSKRPTGDKSTVLIDVREPDEFKQ-GAIETSYNLPVGKIEEAMKLSDEEFSKTYGFSK 122
Query: 425 PNPNTEIIFYCMIGKK 472
P ++ YC G++
Sbjct: 123 PVFEDNVVVYCRSGRR 138
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.1 bits (62), Expect = 0.36
Identities = 27/88 (30%), Positives = 43/88 (48%)
Frame = +2
Query: 161 DITITYVPNVESRRFYAQEAKPAPMIADYDYVKKATKDKNVLLIDVREPDELKEHGIIPN 340
D+ +P+++ R Y ++ K AD + + A LLIDV PD++ E I+
Sbjct: 504 DLKYYGIPDLQKRIEYLEQQKRK---ADAEAIANAQPGSEPLLIDVVGPDQINE--IVAR 558
Query: 341 SVNIPCSVTSVLSSMTEKEFQQIFNRKK 424
IP VT + TEKE ++ N +K
Sbjct: 559 WTGIP--VTRL--KTTEKE--RLLNMEK 580
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 27.1 bits (57), Expect = 1.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 257 KKATKD-KNVLLIDVREPDELKEHGIIPNSVNIPCSVTSVLSSMTEK 394
+K KD +N +L +L+EH I VNIP + T SS K
Sbjct: 733 EKFVKDWRNAMLCFTVRDFKLREHDSILGVVNIPLATTLTTSSQLTK 779
>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 27.1 bits (57), Expect = 1.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 101 LIKVNSIQISNGPLRRFSSLDITITYVPNVESRRFYAQEAKPAPMIAD 244
L ++ +I I RFSSL Y V R YA+ A AP++ D
Sbjct: 23 LKELENIIIEQEEALRFSSLSYADCYSLGVIVRDLYAKAAYTAPIVID 70
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 354 GILTLFGIIPCSFSSSGSLT 295
GI FG + C+F SS SLT
Sbjct: 947 GIYLFFGFLSCAFISSSSLT 966
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 354 GILTLFGIIPCSFSSSGSLT 295
GI TLFG++ C+ S SLT
Sbjct: 945 GIYTLFGLLSCALISLSSLT 964
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 259 LNIVIICNHGCRFRLLRV-KSSRLHIWNVSN 170
L I + C+H CR+R L +L W +SN
Sbjct: 287 LVIALCCHHHCRWRTLSTFAREQLSHWGISN 317
>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
27a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 62 RGIFRKAVPSVFELIKVNSIQISNGPLRRFS-SLDITITYVPNVESRRFYAQEAKPAPMI 238
R F K P F + + + PL R + +LD T VPN ++ + + AP+I
Sbjct: 42 RSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVI 101
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 275 KNVLLIDVR--EPDELKEHGIIPNSVNIPCSVTSVLSSMTEK 394
KN +++D++ E + L E I P SV+I C+ T+K
Sbjct: 497 KNSIILDMQRLEEERLNEPSIYPVSVDISCAEDLRFGKETQK 538
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 346 NTVWNYPMFLQLIWFSYVDKKNIFVFSRFLNIVIICNHG 230
N V YP F ++ F +++VF+R I+ I N G
Sbjct: 382 NLVETYPEFTYVLSFQLYIDDSVYVFTRPGVIIAISNEG 420
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 5.9
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -1
Query: 223 FRLLRVKSSRLHIWNVSNCNIQRGKTSQRPI*DLNRIYFN*FKN*RNSFTKYASCEHFQK 44
F L ++SS+ + N+S+ Q + P L+ + FKN +N T + F K
Sbjct: 220 FPLRGIQSSQFTLSNISDLLSQSRPDNLSPFSHLSNESSDFFKNVKNVLTDVETYHEFLK 279
Query: 43 VLIL 32
+L L
Sbjct: 280 LLNL 283
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 348 LTLFGIIPCSFSSSGSLTSIRRTFL 274
L+LFGI SFS G L S+ T +
Sbjct: 65 LSLFGIFSISFSVLGMLPSVASTLV 89
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 147 VFPLWILQLLTFQMWSLDDFTRRRRNLHP*LQIMTM 254
+ PL + L+T ++DD RRRR+ + +I T+
Sbjct: 142 IAPLIFVLLITLTKEAVDDLKRRRRDSYANNEIYTV 177
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +2
Query: 311 ELKEHGIIPNSVNIPCSVTSVLSSMTEKEFQQIFNRKKPNPN 436
E+KE G++P SV + + E +++F + PN
Sbjct: 951 EMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPN 992
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,973
Number of Sequences: 5004
Number of extensions: 37319
Number of successful extensions: 133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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