Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_M18
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309...    31   0.49 
06_01_1191 + 10240754-10240909,10241477-10241547,10241872-10242910     29   2.6  
05_03_0258 - 11153709-11156090                                         28   3.4  
09_02_0012 + 2965797-2966714,2966756-2967011,2967051-2967147,296...    28   4.5  
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034...    28   4.5  
12_02_0437 - 19084990-19087695                                         27   6.0  
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225...    27   6.0  
05_06_0208 + 26385379-26385485,26385819-26385965,26385994-263860...    27   7.9  

>03_06_0410 -
           33728507-33729415,33729511-33729654,33730054-33730920,
           33731371-33731913
          Length = 820

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 98  ELIKVNSIQISNGPLRRFSSLDITITYVPNVE 193
           E I +NS   S GPL R SS D+ I ++ N+E
Sbjct: 648 ETIDLNSWTRSGGPLMRTSSADMFINFIQNLE 679


>06_01_1191 + 10240754-10240909,10241477-10241547,10241872-10242910
          Length = 421

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -1

Query: 427 WFFSVEDLLKLFLCHGA*N*CHTTWNINTVWNYPMFLQLIWFSYVDKKNIFVFSRFLNI 251
           WF  ++ L+K++L     N    T  I    +  M L   W++YV +K +F+   F N+
Sbjct: 242 WFRELKHLVKIYLYKSHLN--GDTMEILGELHNLMDLHFRWYAYVGEKLVFIEGAFQNL 298


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +2

Query: 308 DELKEHGIIPNSVNIPCSVTSVLSSMTEKEFQQIFNRKK-----PNPNTEIIFYCMIGKK 472
           D +   G++PN+      +T+  +     E   +F+R K     PN NT  + + M+GKK
Sbjct: 345 DTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKK 404


>09_02_0012 +
           2965797-2966714,2966756-2967011,2967051-2967147,
           2967175-2967634,2967804-2968117,2968220-2968235
          Length = 686

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
 Frame = +2

Query: 98  ELIKVNSIQISNGPLRRFSSLDITITYVPNVESRRFYAQEAKPAPMIADYDYVKKATKDK 277
           +L ++ S+  +N   R     D +I  V  + +RR   + +K AP     D   +  K  
Sbjct: 357 QLAQLESLVPANESGRIPGQPDPSIENVKAITTRRGTNEISKGAPSSDSVDKEVQPEKTM 416

Query: 278 NVLLIDVREP---DELKEHGIIPNSVNIPCSVTSVLSSMTEKEF-QQIFNRKKPNPNTEI 445
                D R+P   ++      +   ++I   +   +   T   + ++I N K+P P TE+
Sbjct: 417 PQEYCDTRKPSVDEQFTRFVEVIQKIHINVPLLDAMQVPTYARYLKEILNNKRPLPTTEV 476

Query: 446 I 448
           +
Sbjct: 477 V 477


>02_02_0528 +
           11199799-11200470,11201850-11201951,11202858-11203487,
           11204287-11204547
          Length = 554

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 223 FRLLRVKSSRLHIWNVSNCNIQ 158
           F L+ + S  +H+WN+ NC I+
Sbjct: 413 FLLVNLISEAIHLWNIRNCPIR 434


>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 301 SYVDKKNIFVFSRFLNIVIICNHGCRFRLLRV 206
           S+   ++  +F + ++I  ICN    FRLLRV
Sbjct: 555 SWQQLRSFLLFDKHVSISWICNASSNFRLLRV 586


>02_04_0194 +
           20820985-20821027,20822168-20822367,20822477-20822566,
           20822820-20822825,20822866-20823009,20823089-20823580
          Length = 324

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 374 LSSMTEKEFQQIFNRKKPNPNTEIIFYC 457
           LS++  ++ +Q     KP P TE++F C
Sbjct: 18  LSALKSRDKEQEAELAKPEPTTEVLFLC 45


>05_06_0208 +
           26385379-26385485,26385819-26385965,26385994-26386035,
           26386231-26386275,26386375-26386544,26386779-26386864,
           26386953-26387060,26387680-26387809,26388144-26388231,
           26388511-26388555,26388639-26388808,26388931-26389016,
           26389115-26389222,26389332-26389381,26389521-26389725
          Length = 528

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 215 PARKIVETPHLERK*L*YPKRK 150
           P + +VE PH E + L YPK+K
Sbjct: 346 PNKDLVEPPHFEAELLCYPKQK 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,368,289
Number of Sequences: 37544
Number of extensions: 213032
Number of successful extensions: 611
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)