Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_M12
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   1.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    23   5.6  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    23   5.6  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    23   7.4  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    22   9.8  

>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 64 NIPSIFILCYCLWHK 20
          ++PSI+ILC+C  H+
Sbjct: 34 SLPSIYILCHCSKHQ 48


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 137 TGLRIRRQDLPQPVPLVLREGQDAQRFENRERGY 238
           +G R   Q +PQPVP+  R   D Q F      Y
Sbjct: 66  SGQREANQQIPQPVPVQPRY-PDEQNFSMNGETY 98


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 161  DLPQPVPLVLREGQDAQRFENRERG 235
            D+P  +PL L + Q+ +  EN E+G
Sbjct: 1048 DMPFTMPLSLNDKQNNEGDENCEKG 1072


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 208 CVLSLSQYKRH 176
           C+L+L QY+RH
Sbjct: 321 CILTLPQYQRH 331


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 171 NQCLLYCERDKTHSDLKIVKEG 236
           N+C +   R   + DLK+ KEG
Sbjct: 8   NRCFVPVRRILDNEDLKLFKEG 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 944,855
Number of Sequences: 5004
Number of extensions: 14780
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)