Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_M12
(247 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 29 0.52
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 27 2.8
04_01_0514 + 6738706-6739230 27 2.8
03_06_0047 + 31266940-31268394 27 2.8
10_07_0029 + 12031711-12032464,12044289-12044386 26 3.7
10_05_0050 + 8565612-8566523 26 3.7
07_01_0469 - 3552409-3553368 26 3.7
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 26 3.7
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 26 4.9
04_01_0244 - 3194141-3195091,3195301-3195312 26 4.9
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415... 25 6.4
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 25 8.5
01_06_1092 + 34469732-34470118 25 8.5
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 29.1 bits (62), Expect = 0.52
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 50 YTRYISDRRCAN--IRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRF 217
Y ++S R AN ++N A+ RV+ +R + DLP L++REG + RF
Sbjct: 508 YKNFVSQRSDANGWYQKNGVAL-FRVQGLKHDCIRAIQVDLPLKQSLLVREGSEPDRF 564
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 118 AHDDGSXXXXXXXXXAIRNIPSI-FILCYCLWHKIPSFSL 2
+HDDG A +P + I C+ LW+ P F L
Sbjct: 488 SHDDGGFSLMNLFSKATLQLPKLDTIWCHHLWYAAPKFPL 527
>04_01_0514 + 6738706-6739230
Length = 174
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 135 RPVCGSDGKTYHNQCLLYCERDKTHSDL 218
RP G + T+ + C + D+ HSDL
Sbjct: 117 RPTAGENDTTFSHMCAVMKGMDRMHSDL 144
>03_06_0047 + 31266940-31268394
Length = 484
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 126 RNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVK 230
R + C D TY ++CE DK LK+ K
Sbjct: 368 RRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWK 402
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 129 NLRPVCGSDGKTYHNQCLLYCERDKTHSDL 218
+ RP G + T+ + C + D+ HSDL
Sbjct: 115 SFRPTAGENDTTFGHMCAVMRGLDRMHSDL 144
>10_05_0050 + 8565612-8566523
Length = 303
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/67 (22%), Positives = 26/67 (38%)
Frame = +3
Query: 42 KMNILGIFLIXXXXXXXXXXLPSSCACARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLK 221
+MN G++ I ++ +LR G+ TY+ C+ YC + D +
Sbjct: 117 EMNRGGVYRISNTHNMLVVLGCNTVGYTESLRSEGGAYSSTYYIGCMSYCNNSASAQDGQ 176
Query: 222 IVKEGTC 242
G C
Sbjct: 177 CAGVGCC 183
>07_01_0469 - 3552409-3553368
Length = 319
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 135 RPVCGSDGKTYHNQCLLYCERDKTHSDL 218
RP G + T+ + C++ D+ HSDL
Sbjct: 117 RPTAGENFTTFGHMCVVMRGMDRMHSDL 144
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 114 CACARNL-RPVCGSDGKTYHNQCLLYC 191
C C + L P+C G T+ +C+L C
Sbjct: 1186 CLCLKPLIHPLCCPKGHTFCKECILEC 1212
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 80 ANIRRNSAAVVMR----VRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRFENRER 232
A + R S A V + K+LKT ++DLPQ P V E + ++ +R+R
Sbjct: 165 AGLSRKSVATVSTSNAAMSKQLKTVKTPPKKDLPQLTPPVASEKKTSEHPPDRDR 219
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 135 RPVCGSDGKTYHNQCLLYCERDKTHSDL 218
RP G + T+ + C + D+ HSDL
Sbjct: 121 RPTAGENDTTFGHMCAVMRGLDRMHSDL 148
>07_01_0559 +
4151054-4151178,4151306-4153018,4153121-4153412,
4154327-4154636,4155041-4155261
Length = 886
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 186 YCERDKTHSDLKIVKE 233
YCER++T +DL+IV +
Sbjct: 784 YCEREQTMTDLQIVTQ 799
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 88 TPQQRCRRHARAQET*DRSADQTAR--LTTTSASCIARG 198
TP+ R RR RA DR+A + +R L S +C RG
Sbjct: 592 TPESRRRRPERAAAHEDRTARRRSRCPLRRISCACDDRG 630
>01_06_1092 + 34469732-34470118
Length = 128
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 138 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 245
PVCG+DG TY C + + ++ + G CE
Sbjct: 65 PVCGADGVTYWCGC-----PEAACAGARVARRGYCE 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,277,435
Number of Sequences: 37544
Number of extensions: 102339
Number of successful extensions: 333
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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