Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_M12
         (247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              35   1e-04
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   1.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   5.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   6.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   6.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 35.1 bits (77), Expect = 1e-04
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 120 CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVK 230
           C R  RPVC S+GK Y N C L+  R   HS   + K
Sbjct: 110 CPRRHRPVCASNGKIYANHCELH--RAACHSGSSLTK 144


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 246 PHTYPLSRFSNRCASCPSRNTR 181
           P  YPL RF N     P R+ R
Sbjct: 67  PSVYPLLRFENPETHHPIRHGR 88


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 153 DGKTYHNQCLLYCERDKT 206
           DG +Y N     C RD++
Sbjct: 241 DGNSYRNDGERSCSRDRS 258


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 108 SSCACARNLRPVCGSDGKTYHNQCLLY 188
           S  A   +L P   +DG  +   CL++
Sbjct: 411 SRAASKEDLSPSSLADGARFGGSCLIH 437


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 108 SSCACARNLRPVCGSDGKTYHNQCLLY 188
           S  A   +L P   +DG  +   CL++
Sbjct: 411 SRAASKEDLSPSSLADGARFGGSCLIH 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,529
Number of Sequences: 438
Number of extensions: 1162
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)