Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_M11
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    25   2.3  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   3.0  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   4.0  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    24   5.3  

>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 204 QAFNLFGHESIDLRTVSKGNFATACSKDF 290
           QA   FG  S+DL + + G     CS DF
Sbjct: 13  QADAFFGQSSVDLISRALGGQVLGCSDDF 41


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 290 KIFGASGGEISLGNSA*IYRFVPKQIKGLYKSQRWSFRIERFLI 159
           KI GA  G I L     + +++    K  +  QRW F +++FL+
Sbjct: 222 KIVGAIFGIILLLFR--LKKYISHSKKSAFSPQRWKFLLDQFLL 263


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 236 RFTHCFQGKFRHRLLQRFFKTQCRHNR 316
           +FTH  +G FR   + + F +  RH++
Sbjct: 460 QFTHSLEGMFRDVNISKEFTSSFRHSK 486


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 237 DLRTVSKGNFATACSKDFLRL 299
           D+ T++ GN ATAC  + +R+
Sbjct: 270 DVLTLADGNIATACRDEEIRV 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,316,277
Number of Sequences: 5004
Number of extensions: 23070
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)