Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_M11
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 29 0.91
12_02_0745 - 22709630-22709815,22709895-22709993,22710088-227101... 28 2.1
10_01_0231 + 2442722-2442819,2442916-2443026,2443111-2443183,244... 28 2.1
05_04_0253 - 19407939-19407981,19409328-19409464,19409544-194096... 28 2.1
01_06_1366 - 36695031-36695129,36697608-36697706,36697801-366978... 28 2.1
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 27 3.7
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591... 27 3.7
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 27 3.7
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 27 4.9
10_08_0272 - 16387422-16387427,16387428-16387526,16387688-163881... 27 4.9
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 26 6.4
11_02_0137 - 8702661-8703495,8703820-8704628 26 8.5
05_07_0161 + 28089538-28089856,28089921-28090021 26 8.5
>03_01_0300 +
2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 29.1 bits (62), Expect = 0.91
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 310 MATLSLKKSLEQAVAKFPLETVRKSIDSCPNRLKACIKAKGGHFE 176
+ATLS L A+ PLE + + +R K+C KA H+E
Sbjct: 239 LATLSWLSPLLSVGAQRPLELADIPLMAHKDRAKSCYKAMSSHYE 283
>12_02_0745 -
22709630-22709815,22709895-22709993,22710088-22710160,
22710245-22710355,22710452-22710625,22710735-22710892
Length = 266
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 233 YRFTHCFQGKFRHRLLQRFFKTQC 304
YRF H +GK+R R L+R FK C
Sbjct: 151 YRFRHLVRGKWRER-LRRKFKFPC 173
>10_01_0231 +
2442722-2442819,2442916-2443026,2443111-2443183,
2443278-2443376,2443456-2443558,2444358-2444527
Length = 217
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 233 YRFTHCFQGKFRHRLLQRFFKTQC 304
YRF H +GK+R R L+R FK C
Sbjct: 73 YRFRHLVRGKWRER-LRRKFKFPC 95
>05_04_0253 -
19407939-19407981,19409328-19409464,19409544-19409642,
19409737-19409809,19409894-19410004,19410101-19410273
Length = 211
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 233 YRFTHCFQGKFRHRLLQRFFKTQC 304
YRF H +GK+R R L+R FK C
Sbjct: 98 YRFRHLVRGKWRER-LRRKFKFPC 120
>01_06_1366 -
36695031-36695129,36697608-36697706,36697801-36697873,
36697958-36698068,36698163-36698335
Length = 184
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 233 YRFTHCFQGKFRHRLLQRFFKTQC 304
YRF H +GK+R R L+R FK C
Sbjct: 98 YRFRHLVRGKWRER-LRRKFKFPC 120
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 233 YRFTHCFQGKFRHRLLQRFFKTQC 304
YRF H +GK R R L R FK C
Sbjct: 896 YRFRHLVRGKLRER-LSRKFKFPC 918
>04_04_0532 +
26058100-26058229,26058355-26058559,26058678-26059157,
26059262-26059354,26059526-26059636,26059720-26059792,
26060072-26060208,26061040-26061097
Length = 428
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 233 YRFTHCFQGKFRHRLLQRF 289
YRF H +GK+R RL ++F
Sbjct: 343 YRFRHLVRGKWRERLRRKF 361
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 233 YRFTHCFQGKFRHRLLQRF 289
YRF H +GK+R RL ++F
Sbjct: 394 YRFRHLVRGKWRERLRRKF 412
>10_08_0585 -
18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 109 DTLLNFIPTYLLKSQEKIKKRSIRNDHLWLLYRP 210
D L +FIPTYL+ S EK I +L LL P
Sbjct: 593 DALKHFIPTYLVSSGEK-TANGIITKYLTLLDDP 625
>10_08_0272 -
16387422-16387427,16387428-16387526,16387688-16388122,
16388408-16388738,16390821-16390961,16391668-16391736,
16392077-16392312
Length = 438
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 115 LLNFIPTYLLKSQEKIKKRSIRNDHLWLLYRPLIC 219
L NF+P L +Q R ND +W++ L C
Sbjct: 70 LFNFVPVLLELAQAYYVLRVFGNDEVWIITVNLCC 104
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 316 TIMATLSLKKSLEQAVAKFPLETVRKSIDSCPNRL 212
T+ ATL K S + V K+P E + ++ P L
Sbjct: 419 TVSATLKQKSSSVEGVEKWPYEAAALAFEAIPRTL 453
>11_02_0137 - 8702661-8703495,8703820-8704628
Length = 547
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 103 SNDTLLNFIPTYL--LKSQEKIKKRSIRNDHLWLLYRPLICLGTNL*IYALF 252
SN ++P L L Q+ + SI++++LWL + +C+ L +YA +
Sbjct: 86 SNQLAFFWVPFLLIHLGGQDTMTAFSIKDNNLWLRHLLNLCIQVFLALYAFW 137
>05_07_0161 + 28089538-28089856,28089921-28090021
Length = 139
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 297 VLKNLWSKRWRNFPWKQC 244
V K W +RWR W++C
Sbjct: 59 VEKTKWRRRWRRSCWERC 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,758,780
Number of Sequences: 37544
Number of extensions: 125001
Number of successful extensions: 271
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -