Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_M09
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    31   0.13 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    29   0.30 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    29   0.30 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.6  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   3.7  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   3.7  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   4.9  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   4.9  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.5  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   8.5  

>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 42  TQPKIHK--PAIKIPVNPQKPQVFVKAQPQKPVKVTNIQVLNSQTTKVYSKPVE 197
           TQP ++   P +    +P+KP VF K  P+K V+  +    +      Y+ P++
Sbjct: 662 TQPLLNNNLPRMFFVKSPKKPVVFSKRSPKKRVRFDDSMSTSDSGASAYNSPIQ 715


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +3

Query: 195 EPVAPQRRVIRVAPMAGNPRSILLPVTIKDMKDLKSIKIINAADLKNASNMRLAAANLLS 374
           E   P     +  P    PRS+L  + + D   LK  ++ + ++ K+  N+     NLL 
Sbjct: 690 EIATPNSLEFKNNPRIKVPRSLLTILNLHDRSQLKLFEVCHNSEFKDPINLSNCLRNLLE 749

Query: 375 QSTLH----DLKAETRNEYE 422
           +  L     D  A   +EYE
Sbjct: 750 KQLLSYNFTDWFASLGSEYE 769


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 9    KRRPSTTTHVATQPK-IHKPAIKIPVNPQKPQVFVKAQPQKPVKV 140
            K  PST T  A+ P  I KP+  +  N  KP       P  P +V
Sbjct: 1061 KPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPPPPPPPPAEV 1105


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
 Frame = +2

Query: 11  TSSVNNNSRSDPT*N---------P*TGHKNPRKSPKTPSIR*GPTAKTRESHQHTSTEL 163
           TSS + NS   PT +         P TG  +   +P TP++    T+ T      TST  
Sbjct: 155 TSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSS 214

Query: 164 ADDQS--VFETRRACSAAKASDTGSAYGRESPL 256
            D  S  +  T  +C+ + +  TG +    +P+
Sbjct: 215 TDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPI 247


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -3

Query: 314 DYFNRFQILHVLDRYRQEYRAGIPGHRRYPYHSPLRRYRLDGFRIHFGRL 165
           DYF      H L+R R  + +  P H  +P H P   + +    +H  R+
Sbjct: 317 DYFPEIFKRHFLNRKRWLFPSIPPSHLSFPIHVP--NFMITSLLLHKDRI 364


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 324 DLKNASNMRLAAANLLSQSTLHDLKAETRNEY 419
           +L N  N+RL  A L++   + D   E R+EY
Sbjct: 32  NLHNEQNLRLVVAQLIACGRIWDYWNEHRSEY 63


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 113  GPTAKTRESHQHTSTELADDQSVFETRRACSAAKASDTGSAYGRE 247
            G  A  R + +    ELA  Q  +E RRA  AAK     +  GR+
Sbjct: 897  GDEAIDRRNRRRLEQELAKSQKNWERRRARHAAKEGINLNGEGRK 941


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 486 HRHRHSCHYLNRHSYSHCYVHT 421
           H H H  HY+  H Y   + H+
Sbjct: 742 HHHHHHHHYITGHVYGGYHKHS 763


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 149 YVGDFHGFLRLGLNEYLGFLGIYGDFYGRFM 57
           Y G +H F  L    +  FLGI+G  YG F+
Sbjct: 363 YSGSWHFFELL----FFCFLGIFGGLYGEFV 389


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 424 YSYSFRVSALRSCNVLCDNRLAAASLIFEA 335
           YSY  R+S  +S  +  D R++  S +F A
Sbjct: 105 YSYGARISMHKSITLAIDKRISHVSYLFLA 134


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 144 NIQVLNSQTTKVYSKPVEPVAPQRRVIRVAPMAGNPRSILLP 269
           N  V N+Q   + S P   V PQ +    + +A    + +LP
Sbjct: 278 NSAVQNAQPVPMTSSPAMAVVPQNKTAATSTLAAQQGANVLP 319


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 78  PVNPQKPQVFVKAQPQKPVKVTN 146
           P NP+  QV   A+P+K VK+ +
Sbjct: 130 PDNPKTKQVMPSAEPKKHVKLNS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,029
Number of Sequences: 5004
Number of extensions: 42647
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)