Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_M09
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027... 33 0.13
02_04_0172 - 20595357-20596129,20596994-20597138 33 0.13
08_02_0707 - 20212190-20214592 31 0.40
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 30 0.92
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 30 1.2
06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492... 27 6.5
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 27 6.5
03_03_0145 + 14833043-14833113,14833544-14833662,14833834-148339... 27 6.5
02_05_0178 - 26513403-26513983,26515295-26515949 27 6.5
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302... 27 8.6
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 27 8.6
>05_07_0143 +
28000038-28000211,28002217-28002230,28002713-28002788,
28003304-28003865,28004476-28004761,28004848-28005118,
28005478-28005633,28005871-28006368,28006809-28007093
Length = 773
Score = 33.1 bits (72), Expect = 0.13
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +3
Query: 21 STTTHVATQPKIHKPAIKIPVNPQKPQVFVKAQPQKPVKVTNIQV---LNSQTTKVYSKP 191
S T + + P PAI + KP VF AQ + + T+I L Q YS+P
Sbjct: 493 SMTKYNSAAPTTTGPAISMQ-ETLKPGVFSNAQSTQNLPSTSIATGPPLPQQLVHPYSQP 551
Query: 192 VEPVAPQRRVIRVAPMAGNPRSILLP 269
P+AP +I +A N + LP
Sbjct: 552 TVPLAPFANMIGYPYLAQNYPAAYLP 577
>02_04_0172 - 20595357-20596129,20596994-20597138
Length = 305
Score = 33.1 bits (72), Expect = 0.13
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 77 PRKSPKTPSIR*GPTAKTRESHQHTSTELADDQSVFETRRACSAAKASDTGSAYGRESPL 256
PR PK PS+ PTA T S D V S + S + SA G E+P
Sbjct: 114 PRSPPKLPSLASIPTANTERSSSAAQRPSMVDGPVMGEGAPTSPSPTSVSASAAGDEAPA 173
Query: 257 YTLA-GNDQG 283
A G++ G
Sbjct: 174 MAAAIGHESG 183
>08_02_0707 - 20212190-20214592
Length = 800
Score = 31.5 bits (68), Expect = 0.40
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 489 DHRHRH--SCHYLNRHSYSHCYVHTRIHS 409
+H H H SC + + HS+SH + H+ HS
Sbjct: 487 EHHHAHGGSCSHSHSHSHSHSHSHSHSHS 515
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 486 HRHRHSCHYLNRHSYSHCYVH 424
H H HS + + HS+SH +VH
Sbjct: 498 HSHSHSHSHSHSHSHSHSHVH 518
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 501 LAYLDHRHRHSCHYLNRHSYSHCYVHTRIHSES 403
L + H H+ HS+SH + H+ HS S
Sbjct: 481 LVFFHEEHHHAHGGSCSHSHSHSHSHSHSHSHS 513
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 486 HRHRHSCHYLNRHSYSHCYVHTRIHS 409
H H HS + + HS+SH + H H+
Sbjct: 500 HSHSHSHSHSHSHSHSHVHGHEDHHN 525
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 30.3 bits (65), Expect = 0.92
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = +3
Query: 30 THVATQPKIHKPAIKIP------VNPQKPQVFVKAQPQKPVKVTNIQVLNSQTTKVYSKP 191
T +A Q PA P + P +PQ V QPQ +T +Q +Q+ P
Sbjct: 284 TQIAPQNVAQAPAQSAPYAQPQVLQPNQPQHMVPFQPQNQPHLTQLQAPAAQSQSQQHPP 343
Query: 192 VEPVAPQRRVIRVAPMA 242
++ A Q ++++ P +
Sbjct: 344 LQSAA-QTQIVQAQPQS 359
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +3
Query: 33 HVATQP--------KIHKPAIKIPVNPQKPQVFVKAQPQKPVKVTNIQVLNSQ 167
HV TQP I +P + + Q+PQV ++AQ Q+P V Q+ +Q
Sbjct: 466 HVVTQPVQGSQPNINIPQPQLVVQAQLQQPQVILQAQLQQPQVVVQAQLQQTQ 518
>06_03_0812 +
24847716-24847988,24848123-24848221,24848977-24849229,
24850064-24850174,24850558-24850694,24850821-24850934,
24851025-24851224,24851366-24851560,24851636-24851795
Length = 513
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 146 VGDFHGFLRLGLNEYLGFLGIYGDFYGR 63
+GD L LG + YL F G Y YG+
Sbjct: 458 IGDRVNALELGFSAYLSFCGCYDIAYGK 485
>06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +3
Query: 231 APMAGNPRSILLPVTIKDMKDLKSIKIINAADLKNASNMRLAAANLLSQSTLHDLKAETR 410
A A + R+ +KD D++ ++ S ++AAA+ + LHD+ +E
Sbjct: 860 AEAANSDRANFWDKLLKDRYDVQKVEEHTTMGKGKRSRKQMAAADEDDITGLHDMSSED- 918
Query: 411 NEYEYEHNSGNN 446
++Y Y+ + +N
Sbjct: 919 DDYSYDDDVSDN 930
>03_03_0145 +
14833043-14833113,14833544-14833662,14833834-14833991,
14834147-14834587
Length = 262
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 75 IPVNPQKPQVFVKAQPQKPVKVTNIQVLNSQTTKVYSKPVEPVAPQRRVIRV---APMAG 245
+PV P VF QP +P +T V Q +EP A Q +++ AP A
Sbjct: 161 LPVPPSPGTVFPSQQPMQPSPMTTSTVFPLQQPLPQPTVIEPSARQPLELKLFLEAPPAE 220
Query: 246 NP 251
+P
Sbjct: 221 DP 222
>02_05_0178 - 26513403-26513983,26515295-26515949
Length = 411
Score = 27.5 bits (58), Expect = 6.5
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Frame = +3
Query: 51 KIHKPAIKIPVNPQKPQVFVKAQPQKPVKVTNIQVLNSQT--TKVYSKPVEPVAPQRRVI 224
KI + + +NP Q ++ + K + + T T +YS V + +
Sbjct: 271 KISDFGLYLLLNPAGAQEMLETSAAQGYKAPELIKMRDATRETDIYSLGVVLLEMLAQKE 330
Query: 225 RVAPMAGNPRSILLPVTIKDMKDLKSIKIINAADLKNASNMRLAAANL 368
NPR ILLPV+ K++ + I ++DL S NL
Sbjct: 331 SAKDNTPNPRDILLPVSFKNLVLERKISDAFSSDLVRQSKKSGKEKNL 378
>11_01_0401 -
3020606-3020932,3021480-3021626,3021711-3021878,
3021960-3022218,3024469-3024522,3025200-3025375
Length = 376
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 105 ILGVFGDLRGFLWPVYGF*VGSLRELL 25
I+GVF L L P++GF + S++E L
Sbjct: 14 IIGVFAVLASLLDPIHGFYLRSIKEAL 40
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 224 TGSAYGRESPLYTLAGNDQGHEGFE 298
+G YGR++ L+ +GND G++
Sbjct: 692 SGDDYGRDTGLFNESGNDDNESGYK 716
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,252
Number of Sequences: 37544
Number of extensions: 277820
Number of successful extensions: 964
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -