Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_M07
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.8  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   5.8  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   5.8  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   5.8  
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    25   7.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   7.6  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   7.6  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   7.6  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   7.6  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   7.6  

>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 360 GAGVDYMFKDKIGASATAVHTDVFNRNDYSLGG 458
           G+G   +F DK G    A     F++ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 195  HGATLTKTHIPGFGDKMTAAGKV 263
            HG T+   HI   GD MT  G+V
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEV 1314


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 395 NLVLEHVVHSGTDSVEVRNLRNIWQGCSGECFG 297
           N+  + VV SGT   + RN R++  G   +C G
Sbjct: 654 NMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSG 686


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 180 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 269
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 282 NHDFSAKAFATTTLPNIPQVPNFNTVGAGVDYMFKDKIGASATAVHTDVF 431
           N DF   +    +L N   +P   ++G   DY+   K G+ +  V + +F
Sbjct: 171 NPDFQVLSDLRESLQNELGIPLQLSMGMSSDYLLAIKYGSDSVRVGSSIF 220


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 261 VNLFHNDNHDFSAKAFATTTLPNIPQVPN 347
           V L   D +DF A   +  T P+ PQV N
Sbjct: 111 VPLTLKDGNDFGALYASLNTTPHFPQVSN 139


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 41  CQLRRHLRCYGQGTYNWKR 97
           C ++R L C  Q TYN +R
Sbjct: 186 CTVQRGLECLSQSTYNVER 204


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 51  DGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPG 230
           D +SGA++ V  T          GS+  T+ +     T+G   + V     T+T+T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 228 GFGDKMTAAGKVNLFHNDNHDFSAKAFATTTLPNIPQVPN 347
           GF D +T  GK  L     +     A    +LP+ P + N
Sbjct: 396 GFNDTVTNLGKKGLKDGTTNTLQIPAVRLPSLPSSPTIKN 435


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 2   GQLQVAPASGCTNCQLRRHLRCYGQGTYNWKRKSQAQCPWLRRS 133
           GQL  +P     NC L+RH        +  + +S++  P  RRS
Sbjct: 21  GQLSTSPPRRWRNCTLQRHGSRASADEFCEQYRSRSHGPQGRRS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,596
Number of Sequences: 5004
Number of extensions: 43228
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)