Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_M07
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0922 + 20834195-20836603 32 0.20
04_03_0916 + 20794240-20794246,20794585-20796545 31 0.46
04_03_0913 + 20777859-20780309 29 1.4
04_03_0914 + 20788103-20789642,20790036-20790529 29 2.5
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492... 28 3.3
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 28 3.3
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 28 4.3
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 28 4.3
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 27 5.7
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 5.7
12_02_1259 - 27382639-27384284,27386570-27386612 27 7.5
09_03_0172 - 13072575-13073800,13075919-13076054 27 7.5
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824... 27 10.0
05_06_0268 + 26792845-26792891,26793050-26793830 27 10.0
04_03_0911 + 20767041-20767047,20767119-20769322 27 10.0
>04_03_0922 + 20834195-20836603
Length = 802
Score = 32.3 bits (70), Expect = 0.20
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 281 QPRFQCQSIRHYNPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 412
QP+ QC P + +EL C+C G ++ +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 31.1 bits (67), Expect = 0.46
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 281 QPRFQCQSIRHYNPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 412
QP+ QC P + +EL +C C G + +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179
>04_03_0913 + 20777859-20780309
Length = 816
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 281 QPRFQCQSIRHYNPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 412
QP+ C P +EL HC C G V +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 281 QPRFQCQSIRHYNPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 412
QP+ QC P +EL +C C G + +DW + DR
Sbjct: 289 QPKSQCDVYAVCGPYTICIDNELPNCNCIKGFTITSHEDWELEDR 333
>04_04_0165 +
23247265-23247472,23248115-23248407,23249182-23249239,
23249302-23250014
Length = 423
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 264 NLFHND-NHDFSAKAFATTTLPNIPQVPNFNTVGAGVDYM 380
NLF+ DF + TT P IP+ N G +DY+
Sbjct: 79 NLFNGTWVRDFGGPIYTNTTCPTIPEARNCAKYGKQMDYV 118
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 2 GQLQVAPASGCTNCQLRRHLRCYGQGTYNWKRKSQAQCPWLRRSH*PNEVGSRYSW 169
G Q+ P+ G + C++ + G +RK + C ++ H V SR+SW
Sbjct: 517 GSSQIHPSQGRSTCRVECWIHSESAGKE--RRKRRRACARKKKRHQGGAVMSRHSW 570
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 404 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQGCSGECF 300
R NLV+++V HSG + +++ LRN+ G S CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 273 HNDNHDFSAKAFATTTLPNI--PQVPNFNTVGAGVDYMFKDKIGASATAVHT 422
+ D+ DF+ + F+T+T PN+ P VP + + A + + +AT HT
Sbjct: 263 NEDDDDFNPRGFSTSTTPNVSTPAVPEVD-LFADAAFQSANAPLEAATVSHT 313
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 27 AGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 200
AG + + G V + G +NH +S +G GA TAG AY+ +N G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 193 PFTLS*ANPAVAAPNFIWLVRSTEPRALSL*FSF-PVIGTLTIAPEVPSELTVSAPACRR 17
P TL +PA AA + IW +P + SF P + APE P L + A R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485
Query: 16 N 14
+
Sbjct: 486 S 486
>12_02_1259 - 27382639-27384284,27386570-27386612
Length = 562
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 325 GRVVVANALALKSWLSLWKRFTLPA 251
G +VV N +AL +WL ++ R +PA
Sbjct: 359 GSMVVFNMVALTAWLPVYDRAVVPA 383
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 452 QRVVITIKDIGVNGGRRCTNLVLEHVV 372
+ V++T+KD+ GGR CT L E +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307
>06_03_1025 -
26980631-26981286,26981434-26981557,26982290-26982426,
26983220-26983355,26983615-26983922,26985159-26985207
Length = 469
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 30 GALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 200
G SD + A V P E+ ++ G+V++ +L AAT D + G G
Sbjct: 23 GLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKNFRPDQILGEG 79
>05_06_0268 + 26792845-26792891,26793050-26793830
Length = 275
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 301 KHSPLQPCQIFLKFRTSTLS---VPEWTTCSRTRLVHLRPPFTP 423
KH ++ C + + + + + +P+W ++ + +PPFTP
Sbjct: 98 KHRAIRTCLLTVAYHSPSSEPSVIPDWDCSKQSTVNPAQPPFTP 141
>04_03_0911 + 20767041-20767047,20767119-20769322
Length = 736
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = +2
Query: 284 PRFQCQSIRHYNPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 412
P+ QC P + C C G VQ +DW + DR
Sbjct: 233 PKSQCDVYAFCGPFTVCNDITFPSCTCMKGFSVQSPEDWELDDR 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,967
Number of Sequences: 37544
Number of extensions: 321552
Number of successful extensions: 774
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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