Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_M05
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc... 33 0.013
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 29 0.36
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 27 1.5
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 2.6
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 2.6
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 3.4
SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz... 25 3.4
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 25 5.9
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 5.9
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 5.9
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 24 7.8
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 24 7.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 7.8
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 24 7.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 7.8
>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
precursor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 33.5 bits (73), Expect = 0.013
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +2
Query: 32 RYDLGGENKPVVLTSN-KTLPANEWTDVHIARFGHSVSLKINLV---HSYEQWXXXXXXX 199
+YDL N L+S+ T+ + + D+ I +G NLV H Y+ +
Sbjct: 226 QYDLDAYNIVNPLSSSVATIIHDAYVDLSIWDYGVVSPSSYNLVMDVHRYQLYESDECSK 285
Query: 200 XXXXXPMFVGGVDDSIVLNNNTGVTGGFSGCIKDVMIYENAVD 328
V + DSI + VTG +SG + D I+E VD
Sbjct: 286 TLDDHLSDVCSIGDSIASSPYITVTGEWSGTLADCTIFEEGVD 328
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 28.7 bits (61), Expect = 0.36
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 379 IIAALLYISRLDRRIDNV--HCIFINHNILDASTESACHAC 263
++ L+Y ++++R D I +N+ +DA TES C C
Sbjct: 236 LVDVLIYDGKVEKRSDGASYRAIRVNNENIDAFTESPCGNC 276
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 381 SLLLHSCTLADWIEELTMSTAFS*IITSLMHPLNPPVTP 265
SL H+ T ++ I EL + S + T L+H L+ P TP
Sbjct: 175 SLNSHNLTPSNVIRELPIVIHNSHLATCLLHSLSEPPTP 213
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 236 DDSIVLNNNTGVTGGFSGCIKDVMIYENAVDIVNSSIQSANVQECSNND 382
+DS LN+ +TG + ++ + +VDI +++++ AN Q+ + D
Sbjct: 441 EDSKDLNDTNSITGSSPTEESNALVEDTSVDI-SATLEEANTQQENAED 488
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 329 IVNSSIQSANVQECSNNDRGDIP 397
+ NSS+ SA+VQE ++N G P
Sbjct: 341 LTNSSVASADVQERTHNTNGASP 363
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 3.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 285 VDASRML*FMKMQWTLSILRSSLLMYRSAAIMT 383
+ ASRML F+ W++++L S + I T
Sbjct: 123 IKASRMLAFISFAWSMTVLFSGFMSSYGGLIAT 155
>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 3.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 178 PLLIAMYKVNLERYGVAKAR 119
P+ IAM K NLE YG+ +R
Sbjct: 103 PIKIAMAKHNLEIYGIPSSR 122
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 5.9
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 258 LFNTIESSTPPTNMGVSNLRSSVRPSNHCS 169
LFNT ES+TPP + G +L S NH S
Sbjct: 63 LFNTDESTTPP-DYGEDSL-SITHRENHSS 90
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 5.9
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 258 LFNTIESSTPPTNMGVSNLRSSVRPSNHCS 169
LFNT ES+TPP + G +L S NH S
Sbjct: 63 LFNTDESTTPP-DYGEDSL-SITHRENHSS 90
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 24.6 bits (51), Expect = 5.9
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = -2
Query: 342 EELTMSTAFS*I-ITSL--MHPLNPPVTPVLLFNTIESSTPPT---NMGVSNLRSSVRPS 181
E LT+ST I I L + ++P T LL SS+ P N G SNL +RPS
Sbjct: 102 EALTISTPVDPINIDELDRAYAVSPSDTSNLLHPPTSSSSIPIPIKNAGHSNLDHPIRPS 161
Query: 180 NHCS*LCTRLI 148
S R+I
Sbjct: 162 LQSSISSNRII 172
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 314 ENAVDIVNSSIQSANVQECSNNDRGD 391
E +VD+V S +QS +V NDR +
Sbjct: 581 EMSVDLVESIVQSLSVAFKERNDRNE 606
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 24.2 bits (50), Expect = 7.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 321 AFS*IITSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSNL-RSSVRPSNHCS 169
+FS + TS + P+N T T E TNM V N+ + S+ P+ + S
Sbjct: 213 SFSNVTTSPVPPINSNATA----QTAEGHMGATNMTVDNMNKPSIPPNGNTS 260
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 7.8
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Frame = -2
Query: 390 SPLSLLLHSCTLADWIEELTMSTAFS*IITSLMHPLNP-----PVTPVLLFNTIESSTP- 229
SPL SCT + I S++ S IT + P + P+ P +T +S P
Sbjct: 106 SPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPL 165
Query: 228 PTNMGVSNLRSSVRPSNHCS*LCT 157
PT +S+ P+ S L T
Sbjct: 166 PTTSTSCTTSTSIPPTGGSSSLST 189
Score = 24.2 bits (50), Expect = 7.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 288 PLNPPVTPVLLFNTIESSTPPTNMGVSNLRSSVRPSNHCS*LCT 157
P+ P V P +T +STPP S+ +S P S CT
Sbjct: 300 PVTPTVPPT---STSSTSTPPPPASTSSTGTSSSPLPSTSTSCT 340
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 90 LPTNGLTFISRALATPYLSRLTLYIAMSSG 179
+ TN +TF++ ATPY L +++A + G
Sbjct: 1 MSTNKITFLTNWEATPY--HLPIFLAQTRG 28
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 270 TPVLLFNTIESSTPPTNMGVSNLRSSVRPSN 178
TP+ + + SSTP T+ V N +S+ S+
Sbjct: 2398 TPITSSSVLNSSTPITSSTVVNTSTSITSSS 2428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,399
Number of Sequences: 5004
Number of extensions: 32882
Number of successful extensions: 293
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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