Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_M02
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   2.5  
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    26   3.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   3.3  
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    26   4.3  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   4.3  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   7.5  
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    25   7.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   10.0 

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +2

Query: 254 NTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEHS---GAMFIDSKINVYEQFK---QDVQ 415
           N  L+++PH   N ++ N  K IG+  G  + H     A F+ S   +  Q K   QD++
Sbjct: 484 NYTLQINPHSGINPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDME 543

Query: 416 NTGVSEVNELPW 451
           +        L W
Sbjct: 544 SMDAEYYRSLVW 555


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 97  SVFEEVIVRLQRWTSDESQSRNGKPFRRIW 186
           +  EE +V LQ+  S E   R+ + FR+IW
Sbjct: 6   NALEEKVVELQQSESVEVIKRHFREFRKIW 35


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +2

Query: 62  NAYGKCNDYTAHQFLKRSLYDFNA--GLVTRVNQETESHFVVSGLSAWAILSTLSFGAAE 235
           ++Y +   Y+AH   KR +  F+   GL        E  F++S      I     + A +
Sbjct: 444 DSYAEIMRYSAHDLKKRLMIRFDGEDGL-DYGGLSREFFFLLSHKMFDPIYCLFEYSAVD 502

Query: 236 ETFDEINTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEH 352
                 N  L+++PH   N ++ N  + IG+  G  + H
Sbjct: 503 ------NYTLQINPHSSINPEHLNYFRFIGRVIGLAIFH 535


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 64  CIREVQRLYGSSVFEEVIVRLQRWTSDESQSRNGKPFR-RIWTISMGNSIDAIVWR 228
           C+ E   +      E++IVR + W   +S +  G  +    + +++ N +   VW+
Sbjct: 54  CVDEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSIYEVGSFKVAIANVLQKSVWK 109


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 423 PVFWTSCLNC 394
           PVFW SCL+C
Sbjct: 229 PVFWISCLSC 238


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 533 CYYFINSFVSLPI*RNRLLQS 471
           CYY +N F SL    N LLQS
Sbjct: 597 CYYRLNDFKSLIQHTNNLLQS 617


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 140 VTRVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVL 265
           + R+N+  E  FV+         ST    + E+ FDE++ V+
Sbjct: 125 IVRINEIMEKQFVLQKKKNELQSSTEEIDSTEKDFDELHKVI 166


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 62   NAYGKCNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGLS 193
            N  GK       +FL+  +Y  N  L T  N+  +S   V GLS
Sbjct: 1002 NFTGKLVIKHQEEFLEPRVYPANRNLATAHNRHEKSKVSVQGLS 1045


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,011
Number of Sequences: 5004
Number of extensions: 40779
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)