Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_M01
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 1.5
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 26 3.4
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 26 4.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 4.5
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 5.9
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 5.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 5.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 7.8
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.8
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.8
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 186 SVRRSKLKYKN*TPIKIKHCVREEFTEGMPEGNKQTLLRRRNEKN 52
++ RS K K + + H E+ T+GMP N+Q R KN
Sbjct: 35 NIPRSSAKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKN 79
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 426 VRTSSGARRKRAGNDEGRSALGALLSRHVFKIY 524
V+ SSG R A GR A GA+ +++ + Y
Sbjct: 115 VKASSGGGRSSARETIGRVAAGAIAEKYLLEAY 147
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 553 FAQYFARKLV*ILKT*RDNRAPRALLPSSFPARFLLAPLEVLTVWY 416
F+ +L + K RD+ + SS +L+PLEVL WY
Sbjct: 658 FSPNMVERLWVLAKCTRDSAQMSDSIISSLSDVLVLSPLEVLASWY 703
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 503 TSCFQDLYKLTGEVLGEGAYA 565
TSC Q Y+L E L +G+Y+
Sbjct: 63 TSCIQAYYELRNESLAKGSYS 83
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 5.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 290 KMVKKMSEESVDSGVGRCSSQSGSERE-----TEGTPRSTEPSAPVPI 418
K +K+ +S + G G S RE T TPR PS+PVP+
Sbjct: 279 KAFRKVPRKSGEQGKGMKWSIVPEFREEFIAKTRKTPRKRSPSSPVPL 326
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 5.9
Identities = 8/28 (28%), Positives = 12/28 (42%)
Frame = -2
Query: 407 EPMAQCCEGYPPSRARCPTDCYSVPHRY 324
+ + CC+G S +CP C Y
Sbjct: 103 DTVCDCCDGSDESLIKCPNTCAQKAREY 130
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 314 ESVDSGVGRCSSQSGSERETEGTPRSTEPSAPVPIPDSED 433
ES+++ V ++ GS R PSA P+P E+
Sbjct: 131 ESIENPVLSFITRKGSSRHAPNNSNIQPPSAAPPVPGKEN 170
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 317 SVDSGVGRCSSQSGSERETEGTPRSTEPSAPVPIPDSED 433
S DS SS S SE +EG+ S+ S+ SED
Sbjct: 141 SEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSED 179
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 317 SVDSGVGRCSSQSGSERETEGTPRSTEPSAPVPIPDSED 433
S DS SS S SE +EG+ S+ S+ SED
Sbjct: 195 SEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSED 233
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 121 SNAVFYFNWRLIFIL*F*TPY 183
S+ +FYFNW F++ F PY
Sbjct: 244 SSKIFYFNWLGFFVV-FWNPY 263
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 311 EESVDSGVGRCSSQSGSE-RETEGTPRSTEPSAPVPIPDSED 433
EE++ S +S +GS+ ET+ P S +PS + + D++D
Sbjct: 463 EENLFSAALGLNSNTGSQPSETQSKP-SIDPSESITVTDNQD 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,793
Number of Sequences: 5004
Number of extensions: 35737
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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