Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_M01
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428...    29   2.6  
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    28   6.0  

>04_03_0832 +
           20139299-20139520,20139822-20141114,20142697-20142822,
           20143322-20143442,20144213-20144481
          Length = 676

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
 Frame = +3

Query: 435 SSGARRK----RAGNDEGRSALGA----LLSRHVFKIYTSLRAKYWAKVH 560
           SSGARR      AG   GRS+L      L   +   I+TS   + WAK+H
Sbjct: 146 SSGARRNGAAAAAGEGWGRSSLSTATINLSQEYTLAIHTSSYHEIWAKIH 195


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 95  KVINKHCLEGGMKKTADVVSYPSYTRPP 12
           ++I +HC  G + + A+ +S PS+  PP
Sbjct: 702 EMIMQHCGPGNVSRPAERISLPSWVPPP 729


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,821,984
Number of Sequences: 37544
Number of extensions: 251977
Number of successful extensions: 858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)