Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L24
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   0.40 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   0.53 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   0.92 
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    28   1.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   1.6  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   1.6  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.1  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    26   3.7  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   3.7  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    26   3.7  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   6.5  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   6.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   6.5  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.5  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = -1

Query: 568 GSCIPGVDKPENNP---NGVDVSKLKKQCSSDNSPWKCLQEDRGDVAFVSSADLSNFDES 398
           GS + G ++  N+P   NG  V+   KQ +  N+ ++C   D+ D+ FV  + L+N   +
Sbjct: 105 GSELKG-EESHNSPGTLNGTSVANASKQPNMPNATFRC---DKCDMMFVKQSGLTNHKRT 160

Query: 397 QYEL 386
            +++
Sbjct: 161 YHQV 164


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 319 WLCYMWHSWRTSPVLRRRGSGRAVRTGSRRSWISRHLKRKRHLPY 453
           W+ Y+WH      +    G G+ V+T +  S+++  L  ++H P+
Sbjct: 385 WMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSL--RQHGPF 427


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +3

Query: 384  SSSYWLS-SKLDKSALETKATSPLSSCKHFHGLLSLEHCFFSFDTSTPLG-LFSGLSTPG 557
            SS Y L+ SK DK+A+    T           +   EH +F  D  TPLG + +  S   
Sbjct: 1438 SSGYTLNNSKFDKAAVSK--TLSAQDVSRLQKVSCGEHLYFGTDVFTPLGDMATSASMFS 1495

Query: 558  MQDPPKKSAKF 590
            + D  +K+  F
Sbjct: 1496 LDDSSEKTDAF 1506


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 319 WLCYMWHSWRTSPVLRRRGSGRAVRTGSRRSWISRHLKRKRHLPY 453
           W+ Y+WH      +    G G+ V+T    S++   L  K+H P+
Sbjct: 400 WMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSL--KQHGPF 442


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
 Frame = +2

Query: 284  ILG-GQPSSRWRHGYVTCGIVGERVPSSGVAVQAEQFVLALVEVG*VGT*NESDISPILL 460
            +LG G  + +W H +     VG  +P +G+A       L L  +G + +        ILL
Sbjct: 1225 VLGLGFGAIKWMHVFWGTSNVGIFLPWAGIAGPYLSRALWLW-LGILDSIQGIGNGLILL 1283

Query: 461  QTLPRAVIT*TLFLQFRYINAVGIIFWFIDAGYARPSEEIGQVLTHSPV 607
            QTL R  +T TL +     +A  I+  F+      P+     +  ++PV
Sbjct: 1284 QTLSRRHVTNTLMISQLAGSATSILARFVSPTKTGPANVFPDLTGYTPV 1332


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -1

Query: 421 DLSNFDESQYELLCLNRDAGGRDSFSNYATCNIAMSPSRTWLSAKDFL---SDVSIAHTP 251
           +++ F + +  +    R    R   SN ++ N+A +PS T     D L   S  +  H+P
Sbjct: 225 EMNGFSKKRDNVNIPKRTYSARSIPSNISSTNVATTPSNTIFEMDDTLKADSSSNEYHSP 284

Query: 250 LSLAQLLDTRSDLFN 206
            +      T +DL N
Sbjct: 285 TNTLPSYHTEADLDN 299


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 264 IETSERKSLADNQVLDGDMAMLHVA*LENESRPPASRFRQSSSYWLSSKLDK-SALETKA 440
           +ETSE     +N VL    + L    +EN S  P      +S  ++    D   AL+TKA
Sbjct: 486 VETSELSDSDENSVLSNKSSTLSKKVVENTS--PLKYTHSASKSFIGEVQDSLQALKTKA 543

Query: 441 TSPLS 455
             P S
Sbjct: 544 HKPRS 548


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 496 QCSSDNSPWKCLQEDRGDVAFVSSADLSNFDESQYELLCLN 374
           +C + +  WKC+Q   G   +V S  ++  D + +   CL+
Sbjct: 123 KCFNWDMSWKCVQTFEGHSRYVMSLAINPKDTNTFASSCLD 163


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 571 GGSCIPGVDK-PENNPNGVDVSKLKKQCSSDNSPWKCLQEDRG 446
           G SC    D  P   P+    S+ KK C S   P  C QE +G
Sbjct: 222 GSSCCSKKDSSPSEKPSCC--SQEKKSCCSSKKPSCCSQEKKG 262


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 559 IPGVDKPENNPNGVDVSKLKKQCSSDNSP 473
           +P  DK   N NG+   KL   CS   +P
Sbjct: 354 VPNCDKAYKNQNGLKYHKLHGHCSPITTP 382


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 553 GVDKPENNPNGVD-VSKLKK-QCSSDNSPWKCLQEDRGDVAFVSSADLSNFDESQYELLC 380
           G++  + + +G++ +S+L + +C    S W+ LQ  R  V        + FDE   E+  
Sbjct: 243 GLEGRDMSTSGINQLSRLARVECEHHASAWQQLQARRAYVKMELKRVTTEFDEKSVEISR 302

Query: 379 LNRDAG 362
           L +  G
Sbjct: 303 LEKLLG 308


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
 Frame = -2

Query: 420 TYPTSTRASTNCSA*TAT---PEDGTRSPTMPHVT*PCLHLELGCPPRISFPTSQS 262
           T P S +  T C   T     P     SPT   +   C H++L    R+  P S S
Sbjct: 150 TNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNSDS 205


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 538  ENNPNGVDVSKLKKQCSSDN-SPWKCLQEDRGDVAFVSSADLSNFDESQYELL 383
            ++N   V V + K    +++ S WKCL +   D +   S D ++ DE   +LL
Sbjct: 923  KSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSMDFTSNDEQLVQLL 975


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/35 (25%), Positives = 23/35 (65%), Gaps = 6/35 (17%)
 Frame = -1

Query: 538 ENNPNGVDVSK------LKKQCSSDNSPWKCLQED 452
           ++NPN ++++K      ++ +CS++ + WK  Q++
Sbjct: 28  KDNPNNINIAKNLLNNNIQARCSTNEASWKLAQKE 62


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
 Frame = -1

Query: 574 FGGSCIPGVDKPENNPNGVDVSKLKKQCSSDNSPWKCLQEDRGDVAFVSSADLSNFDESQ 395
           F   CIP V+K + +PN   V K     + + S ++ L     D A V+    S    S 
Sbjct: 41  FESECIPTVNKRDLDPNAEGVYKRSFDGNMNPSDFQLLPLAPRDGAIVNVDKESFSKRST 100

Query: 394 YELLCLNRDA-GGRDSFSNYATC 329
             +   N     G D  SN   C
Sbjct: 101 TNMFDFNFSCYFGSDGHSNDTLC 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,405
Number of Sequences: 5004
Number of extensions: 54129
Number of successful extensions: 191
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)