Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L22
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   2.7  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   4.7  
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    26   6.3  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   6.3  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.3  

>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 110 DRLLLLVALCVGVQSRPDCQRTCYYIQHYRSLN 208
           DRL+ L  LC  +++  D  R C  I+ +  LN
Sbjct: 209 DRLIELFPLCEDLENTDDLHRLCSIIKSFVQLN 241


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 316 ATIFCRTSKGTLTPAPEVHGVERESSVRSSDLE 218
           +T F + SKG L P PEV   E E +   + LE
Sbjct: 271 STSFAQMSKGALNPDPEVIEPEDEPTTFRNPLE 303


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 89  SVHKRREDRLLLLVALCVGVQS 154
           SVHK    RLL LV  C G+ S
Sbjct: 877 SVHKEENQRLLDLVGYCSGILS 898


>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 179 NRFADNQVGFERRRTERQAIKDDLPD 102
           ++F D+   FE+R+TE Q I++  PD
Sbjct: 3   SQFKDD-FSFEKRKTESQRIREKYPD 27


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 29  RGGGALNYDPPGCRIRHEGLSVHKRRE 109
           +GG A  Y P G R   +  SVH RR+
Sbjct: 791 KGGYACLYKPQGIRTPTKSTSVHTRRK 817


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 629 FINRNDYSLDGKLNLFKSPDTSVD 700
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,105
Number of Sequences: 5004
Number of extensions: 60937
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)