Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L22
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522     28   6.5  
12_02_0412 - 18799217-18801061                                         28   8.6  

>04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522
          Length = 252

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 346 PIS*V*GTDSATIFCRTSKGTLTPAPEVHGVERESSVRSSDLELSIVQ 203
           P+S +    SA++ C  S  T+ PAP+    E E        E+  V+
Sbjct: 35  PVSFLAAARSASVLCYCSDATVAPAPQAAAAEGEGEEGEKKAEVPPVE 82


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 577 VYSATDSVEVGYXSDIWHISGGESLRCDVV 488
           +YS+   +E G   D+W+I GG  L   V+
Sbjct: 23  IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,165,986
Number of Sequences: 37544
Number of extensions: 473530
Number of successful extensions: 1338
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)