Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L22
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.24 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.96 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 11  REQWSYRGGGALNYDPPGCRIRHE 82
           R  +S+   G L Y+P  CR RHE
Sbjct: 504 RRFFSFHQWGILVYEPSACRPRHE 527



 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 212 NSSGSY--SVEYSNRFADNQVGFERRRTERQAIKDDLPDVC 96
           N S  Y  S+ +S+   +N    ER   E+ A  +DL ++C
Sbjct: 231 NHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELC 271


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
 Frame = +1

Query: 457 RQSESLPQRXPRHHSEGFRHQKYARYRXCTQLQHCRWRN-RLYVQRLDWCISDRRSHGLH 633
           R+ + L     +H  E    ++Y+R R   Q  +   R  R Y +       DRR  G  
Sbjct: 265 RRYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRGRGRS 324

Query: 634 QS*RLLPGRKAEPLQES*HLGRF 702
           +  R++P    E +    + G F
Sbjct: 325 REHRIIPSHYIEQIPAPVYYGNF 347


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 513 AKAFAVMSWXSLWKRFTLPAAVTL 442
           AK  +V  W S W     P+A T+
Sbjct: 328 AKTISVQQWNSYWGILGFPSAPTI 351


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 513 AKAFAVMSWXSLWKRFTLPAAVTL 442
           AK  +V  W S W     P+A T+
Sbjct: 328 AKTISVQQWNSYWGILGFPSAPTI 351


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 510  SPPEICQISLMYPTSTLSVAE*TICSKIRLVHQRPPLTRTSSIVTITPWTES 665
            S P  CQ     P + +++    + S+  LV  RPP      I   T +T++
Sbjct: 1168 SAPIHCQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNGVITQYTVYTKA 1219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,473
Number of Sequences: 438
Number of extensions: 4383
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)