Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_L21
(523 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 67 2e-12
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 36 0.003
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 26 3.9
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 5.2
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 5.2
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 5.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 6.8
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 9.0
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 9.0
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 9.0
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 66.9 bits (156), Expect = 2e-12
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Frame = +3
Query: 216 EADKGLQTSEDARFYALSRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQ 392
+ + GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+
Sbjct: 87 KGEAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTH 145
Query: 393 KDMHGETPYEIMFGPDICGPGTKKVHVIFSYK 488
+M Y IMFGPD CG +VH IF +K
Sbjct: 146 GEMSNSIDYRIMFGPDKCGV-NDRVHFIFKHK 176
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 36.3 bits (80), Expect = 0.003
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Frame = +3
Query: 96 VFFEEKFSDD--SWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL- 266
VF E+ S+D +W S W K+ G + L + + GL T + + + L
Sbjct: 32 VFSEQFTSEDITTWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILI 88
Query: 267 SRKFKPFSNEGK--PLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPD 440
S P + + P+V+ F VK + CG Y+ + + + K++ E P I FG
Sbjct: 89 SNLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVK 147
Query: 441 ICGPGTKKVHVIFSYKGK 494
CG I SY GK
Sbjct: 148 KCGMFDYISLSIISYDGK 165
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 177 KFKLTAGKFYNDAEADKGLQTSEDARFYALSRKFKPFSNEGKPLVVQ 317
K LT Y++ D G+ FY + P S +PLVV+
Sbjct: 578 KTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVK 624
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -3
Query: 473 HVNLLCTRTTDIRPKHNLVGCLAMHVLLVQSTVEYLQVTASAVDVLFVL 327
H ++ T + +P H LV + + + QVT S + VLF +
Sbjct: 1908 HPDISLNMTPNFKPSHELVQLINSSPFYRKHIISVHQVTRSDLHVLFAI 1956
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 518 DVLLDQMVLPFVAEDHVNLLCTRTTDIRPKHNLVGCLAMHVLLVQST 378
DV+ QM L +A HV +L + RP LV + M +L S+
Sbjct: 700 DVVWGQMNLLTLAVTHVKVLLELCINARPSTVLVPAMKMATILSSSS 746
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 229 VYRHLKTRGSTPYRGNSSHSA 291
++R LKTRG+TP G HS+
Sbjct: 338 LFRALKTRGNTPKYGIIYHSS 358
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 192 AGKFYNDAEADKGLQTSEDARFYALSRKFKPFSNE 296
A F + +E+ KGL +SE Y+L P SN+
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQ 296
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = +3
Query: 132 ESNWVYSEHPGKEFGKFKLTAGKFYNDAEA--DKGLQTSEDARFYALSRKFKPFSNEGKP 305
+S W E+P K + F D+ A + A Y+ + + F++ +
Sbjct: 569 QSQWHDLENP-IVLKKGQAPVNNFSTDSRASINSSYLLDSAASNYSGTSHNEMFNSFHRS 627
Query: 306 LVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEI 425
V S+K + + G + LDQ +HG+T EI
Sbjct: 628 SVTSASIKSREAVLSAGNSSRRASIFLDQLSLHGDTDSEI 667
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 258 YALSRKFKPFSNEGKPLVVQFSVKHEQDIDCG 353
Y +SRK P L + F K DCG
Sbjct: 960 YEVSRKINPLHQASTRLAIAFPDKRLLQYDCG 991
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = -3
Query: 368 LQVTASAVDVLFVLHTELYHQRFALIAEWLEFPR*GVEPRVFRCL*TFIRLCVIV 204
L S VLF LHT L + W +P G +P + + +C ++
Sbjct: 470 LSAALSLGTVLFCLHTFLCDSTVLMTWSWDGYPIKGPQPYPHGAVSIVVSICAVL 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,935
Number of Sequences: 5004
Number of extensions: 47750
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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