Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_L20
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 37 0.009
07_01_0097 + 725677-725775,725923-726044,726228-726369 30 0.98
08_01_0624 - 5440405-5441071,5441931-5442265 29 1.7
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 2.3
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076... 29 3.0
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 4.0
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 28 5.2
04_04_0289 + 24167246-24167411,24167584-24167708,24167744-241686... 27 9.1
02_03_0338 + 17905341-17906002,17906214-17906499,17907975-17908640 27 9.1
>03_02_0594 -
9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 269 YVASALLDAFDGHAARYFNQSTKFGAILDQLTDRAGTAGLMMTLAT 406
++A+A+ D DG+ AR T FGA LD + D+ A ++ L T
Sbjct: 171 FLAAAVTDWLDGYIARKMQLGTPFGAFLDPVADKLMVAATLVLLCT 216
>07_01_0097 + 725677-725775,725923-726044,726228-726369
Length = 120
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 187 YYWIWENNTSDYIILFYVYALC-IVVHL 267
Y W W NN S IIL + LC V+HL
Sbjct: 82 YNWAWSNNISFLIILCSCFGLCHAVLHL 109
>08_01_0624 - 5440405-5441071,5441931-5442265
Length = 333
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 ICYVASALLDAFDGHAARYFNQSTKFGAILDQLTDRAGT-AGLMMTLATF 409
+C +A A +D DG ++ Q G +LD + RA T + + TF
Sbjct: 77 LCAMAKAAIDRSDGQIESFWAQKFVTGELLDYIVRRASTLKSIRLVACTF 126
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 248 CVLSCICYVASALLDAFDGHAARYFNQSTKFGAILDQLTDRAG 376
CV Y L +GH AR F +F A+LD++ AG
Sbjct: 757 CVKEVTEYFHGELSSGDEGHMARVFGSVREFLAMLDRICKEAG 799
>02_05_0177 +
26505956-26506202,26506838-26507247,26507448-26507624,
26507775-26507999,26508089-26508265,26508357-26508593,
26508855-26508944,26509102-26509254
Length = 571
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +2
Query: 224 SFYFMSTHCVLSCICYV-ASALLDAFDGHAARY----FNQSTKFGAILDQLTD-RAGTAG 385
SF CVL+ +CY ++ A G A Y FN+ T F + D G A
Sbjct: 87 SFVLAGAACVLNALCYAELASRFPAVVGGAYLYTYAAFNELTAFLVFTQLMLDYHIGAAS 146
Query: 386 LMMTLATFYPRY 421
+ +LA+++ ++
Sbjct: 147 IARSLASYFVQF 158
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 301 WACCKV-FQSKY*-IWSHTGSAYRPCRHCWVDDDLSNILS--SVHLLVT 435
+ CC V F + Y + ++ RP HC DD+ ++LS SV+LL T
Sbjct: 1638 YKCCPVCFNAVYKMVHDILSNSVRPSLHCLAVDDMHDLLSSWSVNLLAT 1686
>11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 246 IVYCRASATLLLLCSMRLMGMLQGISIKVLNLEP 347
+ +C +S TL C R + Q SI V+NLEP
Sbjct: 1315 LAHCESSTTLD--CRKRKLSFQQAASIPVINLEP 1346
>04_04_0289 +
24167246-24167411,24167584-24167708,24167744-24168694,
24168788-24168940,24169251-24169475,24170102-24170587
Length = 701
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 102 LFIRCTALHSPFISR*LTLKKTFFYLSLILLDLGE 206
L + C + P S +T + YLSL+ D GE
Sbjct: 285 LHLECITVQGPCFSNVITACEKLSYLSLVYCDFGE 319
>02_03_0338 + 17905341-17906002,17906214-17906499,17907975-17908640
Length = 537
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 337 IWSHTGSAYRPCRHCWVDDDLS 402
+WSH G +R R WV + LS
Sbjct: 128 LWSHYGEYWRQARRLWVTELLS 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,992,867
Number of Sequences: 37544
Number of extensions: 243011
Number of successful extensions: 480
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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