Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_L20
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-4|CAB60350.1|  220|Caenorhabditis elegans Hypothetical ...   113   5e-26
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    29   1.5  
U41547-4|AAA83194.3|  376|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U28736-2|AAA68307.1|  620|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AL110485-4|CAB60350.1|  220|Caenorhabditis elegans Hypothetical
           protein Y46G5A.5 protein.
          Length = 220

 Score =  113 bits (273), Expect = 5e-26
 Identities = 53/112 (47%), Positives = 70/112 (62%)
 Frame = +2

Query: 164 NIFLFVPNXXXXXXXXXXXXSFYFMSTHCVLSCICYVASALLDAFDGHAARYFNQSTKFG 343
           N++LF PN            + Y+MS+    +  CY  SA LDAFDG AAR +NQS++FG
Sbjct: 11  NVWLFYPNLIGYGRIVLAILAMYYMSSAPWCAMFCYALSAGLDAFDGWAARTYNQSSRFG 70

Query: 344 AILDQLTDRAGTAGLMMTLATFYPRYTFWLQISMAIDITCHWIYLHSSTLQG 499
           A+LDQLTDR     L+M L  FYP + F LQ+S  IDI  HW++LH++ L G
Sbjct: 71  AMLDQLTDRCALLALVMALCKFYPDHLFLLQLSAVIDIASHWLHLHATDLSG 122


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 208 NTSDYIILFYVYALCIVVHLL-RCFCSA 288
           N   ++I FYV+ +C +VH++   FC A
Sbjct: 167 NIQVHVIFFYVFGICGIVHMISNIFCHA 194


>U41547-4|AAA83194.3|  376|Caenorhabditis elegans Hypothetical
           protein F22A3.1 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 325 IEIPCSMPIKRIEQSRSNVADARQYTMRRHKIK 227
           +++PC++PI+ IE +R    DA   T  +++I+
Sbjct: 1   MDMPCNLPIQPIEYNRRFSKDADHSTFVKNEIE 33


>U28736-2|AAA68307.1|  620|Caenorhabditis elegans Hypothetical
           protein F26A10.2 protein.
          Length = 620

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 289 RCV*WACCKVFQSKY*IWSHTGSAYRPCRHCWVDDDLSNILSSVH 423
           RC  + CC  F+S+  +  H       CR C+V    +NI+ SVH
Sbjct: 327 RC--FECCGQFKSQIALRRHKDQ----CRPCFVPPTQNNIMVSVH 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,279
Number of Sequences: 27780
Number of extensions: 225835
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)